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0 votes
2 replies
1.4K views
How to get the reference panel for UKBB
ukbb gwas clump
written by 航太郎 0
0 votes
12 replies
4.4K views
Downloaded pdb's on rcsb.org
rcsb pdb
updated by Ram 4.5K • | written by iamsmor 0
0 votes
0 replies
518 views
create genewise sync file in popoolation
popoolation
updated by GenoMax 16K • | written by N.Y.Wiyana-Hewage 0
0 votes
2 replies
1.0K views
error in coding potential calculator CPC2
cpc cpc2 coding-potential
written by Ashok 0
0 votes
2 replies
1.2K views
miRNAs quantification using mirdeep2 tool
differential-expression mirdeep2 mirna
written by Ashok 0
1 vote
0 replies
853 views
Variant Generation Using Longshot
long-reads variant-calling ont minion longshot
updated by Ram 4.5K • | written by samuelkalandarov2002 2
0 votes
2 replies
1.4K views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control snv qc snp
written by _quantum_girl_ 8
0 votes
0 replies
975 views
traying to make a maf from an already annotated vcf
vcf vcf2maf maf maftools vep
written by Javier 0
0 votes
4 replies
2.3K views
What happened to Tombo Re-squiggle
tombo resquiggle ont
updated by Ram 4.5K • | written by turcoa1 0
0 votes
0 replies
785 views
Pruning with plink finds a majority of SNPs in very high LD
ld snp plink pruning
written by enferdeflame 0
0 votes
1 reply
1.1K views
Difference when using difference number of pathways score to compare between 3 groups
gsva limma
updated by Gordon Smyth 916 • | written by Chris 36
0 votes
0 replies
714 views
News: Online course: Meta-analysis in R
meta-analysis statistics r
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
9 replies
2.5K views
How can I retrieve wheat lysine non-acetylated sequences from the UniProt database?
uniprot
updated by Elisabeth Gasteiger 243 • | written by Jacky 0
0 votes
1 reply
1.3K views
10x VDJ (TCR/BCR) BAM to fastq
tcr vdj bcr 10x
updated by GenoMax 16K • | written by predeus 212
0 votes
1 reply
740 views
DEseq2
rna-seq deseq2
updated by Ram 4.5K • | written by rrehimi 0
0 votes
0 replies
623 views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
netlogo individual-based-models agent-based-models
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
2 replies
1.8K views
Assume "yes" as the answer to any prompts with bioconda
docker container bioconda
updated by Juke34 949 • | written by njornet 2
1 vote
0 replies
1.9K views
Tutorial: DNA Methylation: Sequencing Techniques
wgbs rrbs
written by Novogene 54
0 votes
1 reply
1.1K views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree microbiome
updated by Ram 4.5K • | written by Muhammad 1
0 votes
3 replies
1.5K views
Korean human genome reference file
gwas reference imputation
written by SeoG 1
0 votes
0 replies
490 views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau-score tspex
updated by Ram 4.5K • | written by bioinfo223 1
0 votes
0 replies
581 views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpeff
written by ekirsch 0
0 votes
1 reply
1.1K views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow python-apollo apollo
written by renan.igor 0
0 votes
1 reply
935 views
Pediococcus acidilactici sequence analysis
blast gene-ontology
updated by Ram 4.5K • | written by anasjamshed 14
2 votes
1 reply
1.6K views
What is the normalization status of metabric data?
metabric normalization microarray cbioportal
updated by etiennedanis 2 • | written by DareDevil 448
0 votes
0 replies
1.4K views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
written by synat.keam 12
0 votes
1 reply
731 views
assembly using CCS, CLR, CCS_CLR sequences together?
assembly
updated by GenoMax 16K • | written by ycts 0
1 vote
4 replies
3.4K views
DEG analysis of RNA-seq data across multiple tissues and two conditions
rna-seq edger degs deseq2
written by BioinfGuru 214
1 vote
1 reply
1.2K views
Inconsistency in SNP detection pipelines for multi-sample analysis
vcf bam bcf snps
updated by LChart 518 • | written by George 3
0 votes
4 replies
1.7K views
Per base sequence content failed miserably
fastqc sequence trimmomatic ngs assembly
written by Kai Xin 0
0 votes
1 reply
662 views
Retrieve a % coverage for each transcript
rna-seq
updated by Ram 4.5K • | written by jammydodger123456 4
0 votes
2 replies
1.1K views
How can I solve this error?
metal
written by 22211020193 0
0 votes
0 replies
558 views
Struggling to lift genome builds
plink liftover gwas
updated by GenoMax 16K • | written by srimmer 0
0 votes
4 replies
1.2K views
Can I readmap short reads to rDNA references?
rdna assembly
updated by GenoMax 16K • | written by aniigodwinn 0
0 votes
3 replies
1.7K views
Sheep reference genome remapping coordinates
reference remap sheep coordinates genome
written by valentinatsar 0
0 votes
3 replies
1.7K views
Editing Human Reference Genome by adding a CDS
gff agat transcriptome
updated by Michael Dondrup 5.6K • | written by LDT 34
0 votes
11 replies
3.2K views
Questions about a bug when transferring cram file to bam file
sequence samtools bcftools
updated by jkbonfield 133 • | written by me 0
0 votes
2 replies
1.5K views
differential gene expression analysis when not all samples have an untreated counterpart
differential-expression edger
written by nhaus 44
0 votes
0 replies
833 views
Looking for an explanation as to what the Peak Score is from HOMER, not finding any answers on Biostars yet
homer atac-seq
written by Ronin 1
0 votes
2 replies
4.5K views
How to convert SAM/BAM file to GTF/GFF file?
gtf sam bam gff minimap2
updated by Arslan Tariq 14 • | written by BioinfoBee 0
0 votes
7 replies
3.4K views
Removing duplicates
duplicates ont minimap2
updated by noodle 65 • | written by quentinperriere 0
0 votes
1 reply
1.1K views
Annotating a dataset with gnomAD v4 using Hail
python sequencing hail exome annotation
updated by DKA 4 • | written by james.melhorn 0
0 votes
4 replies
4.7K views
biomaRt error for different R version
biomart r
updated by GenoMax 16K • | written by manaswwm 64
0 votes
1 reply
677 views
Freyja plot error
freyja
updated by Ram 4.5K • | written by Adyasha 0
1 vote
2 replies
958 views
Interpretation of combined P values - RNA microarray meta analysis
metaanalysis r microarray dexma combinedp
written by hagl 2
0 votes
0 replies
597 views
BIOM format can contain tabular data ?
biom phyloseq biomformat r
written by chemokine-1 1
0 votes
4 replies
2.5K views
How to reduce the variation of CIBERSORTx results?
cibersortx deconcolution
written by feather-W 0
0 votes
0 replies
816 views
sequence table for DADA2 chimera filtering
otu sequencetable dada2
written by Ali 0
0 votes
4 replies
1.2K views
SnpEff annotates coding duplication as intronic?
snpeff
written by kirill.zaslavsky 0
0 votes
4 replies
1.6K views
Calculating percentage of cells proliferating in single cell rna seq data
statistics scrna-seq proliferation
written by mropri 17
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