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0 votes
0 replies
659 views
News: Online course: DNA methylation
pacbio nanopore dnamethylation evolution
written by Physalia-courses 281
0 votes
0 replies
1.1K views
Job: Ensembl Plants Senior Bioinformatician
ebi embl genomics ensembl
written by Ben Moore 241
0 votes
4 replies
2.4K views
What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
chip-seq
written by HyperEvo 0
0 votes
2 replies
858 views
RNA-seq bacteria contamination
rna-seq
written by sh 0
0 votes
2 replies
903 views
Result of running of p3_in.pl
primer3
updated by GenoMax 16K • | written by nasri 0
0 votes
1 reply
931 views
FAM FILE
fam
updated by Ram 4.5K • | written by Eleonora 0
0 votes
0 replies
558 views
Imputation advice
imputation
written by kl 2
0 votes
5 replies
1.5K views
Per base sequence content error in RNAseq analysis
rna-seq analysis
updated by GenoMax 16K • | written by ahmad.sajad4541 0
0 votes
0 replies
676 views
Trimming best practices for SNP calling
trimming snp trimmomatic
written by Enrique 0
0 votes
5 replies
1.9K views
SLURM submission problem: Indexing the Reference Genome is not done in STAR
align rna-seq linux star
written by n_navy 1
0 votes
0 replies
548 views
Correct way of reducing predictive model complexity
lasso glmnet predictvemodeling regression
written by sativus 2
1 vote
3 replies
1.9K views
Interpretting IGV output
igv
updated by Carlo Yague 906 • | written by Bushra Bibi 8
0 votes
1 reply
744 views
homology modelling using swiss model
homology-modeling swiss-model
updated by colindaven 844 • | written by Ayush 0
0 votes
0 replies
413 views
Difficulties getting **the adjacency file** necessary for **aracne2regulon** function.
viper marina aracne
written by Biostars2200 0
0 votes
5 replies
1.7K views
DYH17 Structure Prediction
blast protein-structure-prediction
written by anasjamshed 14
0 votes
0 replies
604 views
CIRIquant: ValueError: file has no sequences defined (mode='rb') - is it SAM/BAM format? Consider opening with check_sq=False
ciriquant
updated by Carlo Yague 906 • | written by Atul K. 0
0 votes
2 replies
1.2K views
p-value and Boneferroni adjusted p-value the same in R
bonferroni r statistics p-value fisher
written by kristiewyleung 0
0 votes
5 replies
2.3K views
Marking duplicates using UMIs
umi deduplication
written by Lipika 0
0 votes
0 replies
545 views
How to extract the mutations specific to cancer after variant annotation
variant-annotation
updated by Ram 4.5K • | written by sainavyav22 0
0 votes
0 replies
701 views
Bacterial genome alignment with mauve
bacteria mauve genome
written by rthapa 9
0 votes
0 replies
703 views
Reparametrization of .str (param penalty > 100) File from CGenFF for Ligand Simulation in GROMACS
simulation cgenff gromacs vmd
written by Mamatha Y S 0
0 votes
0 replies
625 views
News: upcoming online statistical courses
statistics r data-analysis
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
4 replies
1.7K views
how to find genes that are significantly expressed in brain cortex samples
rna-seq gene-expression
updated by ATpoint 9.1K • | written by rheab1230 15
0 votes
2 replies
1.1K views
bam merging for archaic samples
samtools bam
updated by Ram 4.5K • | written by Matteo Ungaro 16
0 votes
6 replies
1.8K views
Filtering sam or bam file with maximum matching region
crisper-edited alignment match
written by Bushra Bibi 8
0 votes
1 reply
972 views
Removing Illumina microarray probes with no expression HumanHT-12v4
microarray humanht-12v4 illumina
updated by Gordon Smyth 916 • | written by Bioinformatician 0
0 votes
0 replies
1.0K views
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
primers trinity
written by mathavanbioinfo 8
0 votes
1 reply
1.2K views
GTF file from Stringtie to R Studio for either Ballgown or DESeq2
stringtie cufflinks ballgown deseq2
updated by Ram 4.5K • | written by Nina 0
0 votes
5 replies
4.1K views
MEGA Analysis Issue on High-Performance Computer
phylogenetic-analysis mega
updated by Mensur Dlakic 3.0K • | written by Giorgio 0
0 votes
1 reply
1.3K views
Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits
shotgun metagenomics blastp taxonomy
updated by GenoMax 16K • | written by rebecca.calvo 0
2 votes
5 replies
2.2K views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated by Jesse 94 • | written by Ann 241
0 votes
0 replies
770 views
agilent microarray gpl data does not have gene symbol column
microarray agilent gpl
updated by Ram 4.5K • | written by mja 0
0 votes
0 replies
622 views
scRNA Cluster frequency
cv pca scrna cluster-frequency
written by Nitin 0
0 votes
5 replies
2.7K views
Duplicate marking, read names, and the SRA
sra markduplicates
updated by GenoMax 16K • | written by Luka 0
0 votes
0 replies
651 views
Chemical structure validation
structure cap validation metabolite
written by Rodolfo Adrián 0
0 votes
8 replies
3.5K views
Cellranger count error: Input FASTQ file ended prematurely
scrna-seq cellranger starsolo 10x
updated by swbarnes2 1.5K • | written by bp22 8
0 votes
1 reply
869 views
Downloading the raw microarray data from GEO
.gpr microarray .cel
updated by GenoMax 16K • | written by bioyas 2
0 votes
0 replies
710 views
Copy number variation plot
copy-number-variation genomics
updated by Ram 4.5K • | written by Emmi 0
0 votes
5 replies
2.0K views
RNA seq differential expression analysis
rna-seq normalization
updated by BioinfGuru 214 • | written by rrehimi 0
0 votes
1 reply
772 views
Could you please assist in identifying this cluster?
single-cell
updated by Ram 4.5K • | written by carolofharvest 6
0 votes
9 replies
3.7K views
Tool: CANEapp, a user-friendly application for automated next generation transcriptomic data analysis
rna-seq
updated by a.l.b.e.r.to.2.5.s.an.ic.s. 0 • | written by dvelmeshev 0
0 votes
7 replies
6.9K views
Memory usage of picard Samsort
picard sortsam
updated by ATpoint 9.1K • | written by boymin2020 8
4 votes
13 replies
11K views
Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
r ubuntu linux bioconductor rstudio
updated by ATpoint 9.1K • | written by BioinfGuru 214
0 votes
1 reply
1.2K views
Plink merge errors.
cygwin64 bed plink
written by Dinmukhamed 1
0 votes
0 replies
603 views
Conversion to tree format
plink bed figtree splitstree
updated by Ram 4.5K • | written by Dinmukhamed 1
0 votes
0 replies
617 views
miRDeep2: How to get the read counts
mirdeep2
written by Atul K. 0
0 votes
4 replies
1.9K views
Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (without Blat)
mapping
written by rahu 0
0 votes
0 replies
639 views
Lncipedia GTF file error
proteomics
updated by Ram 4.5K • | written by atharvakarkare14 4
6 votes
3 replies
7.2K views
Tutorial: Prediction of Ribosomal RNA Genes Using RNAmmer Software
genome annotation rnammer rrna
written by Arslan Tariq 14
1 vote
3 replies
1.9K views
Free/open source 23andme-like analysis
snps genomics ngs vcf
updated by swbarnes2 1.5K • | written by noodle 65
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