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0 votes
9 replies
2.2K views
TCGA2STAT Error: Firehose connection
firehose tcga
updated by LauferVA 497 • | written by Gnana 0
0 votes
1 reply
1.6K views
Find subcluster under a cluster, find differential genes in one cluster between 2 samples??
clustering subclustering scrnaseq
updated by bk11 312 • | written by alphaflylizard 0
0 votes
3 replies
1.4K views
Difference between samtools "-f 9" and "-f 11"
samtools sam bam
updated by Istvan Albert 10K • | written by Dylan 0
2 votes
5 replies
2.2K views
How to trim transcripts using information from NCBI contamination screen report
rnaseq assembly transcriptome contamination
written by Lada 6
0 votes
11 replies
3.2K views
Redirection of Duplicate PMIDs
pubmed pmid
updated by LauferVA 497 • | written by dominickd 0
0 votes
16 replies
4.7K views
How to convert plink files to Hapmap Format
gwas plink
updated by bk11 312 • | written by Sofia 0
0 votes
0 replies
578 views
The concept of co-occurrence network structure
co-occurence microbiome network
written by ohtang7 4
3 votes
0 replies
590 views
News: Interested in Spatial Omics?
bioconductor spatial-omics spatial-transcriptomics
updated by Ram 4.5K • | written by Physalia-courses 281
1 vote
2 replies
1.6K views
Using vg gamsort with naive sorting algorithm
gamsort vg
updated by Pierre Lindenbaum 17K • | written by AshleeThomson 13
0 votes
1 reply
767 views
Plot DNA methylation level of DMR on the basis of certain genes
rrbs methylkit
updated by GenoMax 16K • | written by Srinka 2
4 votes
5 replies
10K views
ISCN annotation for SV/CN VCF files
sv
updated by princessmaryanabdullahi 0 • | written by a.beggs 6
0 votes
5 replies
1.8K views
Should I remove unlocalized scaffols in reference genome before alignment?
qualimap alignment minimap2 grch38 assembly
written by njornet 2
2 votes
4 replies
3.5K views
How to compare the quality of assemblies
nextdenovo assembly hifiasm pacbio
written by kirillkirilenko 4
0 votes
0 replies
544 views
Software to calculate RSCU, ENC other than codonw
rscu codonw
updated by Ram 4.5K • | written by SHREYA 0
0 votes
3 replies
1.7K views
How to identify gaps in a genome?
awk seqkit assembly fasta genome
updated by colindaven 844 • | written by rj.rezwan 2
0 votes
0 replies
650 views
Merging replicates from Encode project
chip-seq encode
written by Nurken 0
1 vote
3 replies
1.3K views
Filter BAM to keep only alignments at an interval, ignoring reads spliced over
samtools bam splicing
written by WouterDeCoster 4.8K
0 votes
3 replies
970 views
Help for coding: Trinity for differential gene expression studies
gene
updated by mchour 0 • | written by rhossen 0
0 votes
1 reply
1.5K views
WGCNA preservation analysis
wgcna preservation
updated by Michael Dondrup 5.6K • | written by michael.flower.14 21
0 votes
4 replies
1.8K views
some error in building kraken2 database
metagenome kraken2
updated by GenoMax 16K • | written by Art1ess 0
0 votes
1 reply
1.6K views
Subset Seurat object from Xenium spatial data
seurat xenium spatial
updated by bk11 312 • | written by Susmita Mandal 11
0 votes
1 reply
1.8K views
Plots for DNA methylation data
plots dna methylation
updated by GenoMax 16K • | written by sarahawan92 1
0 votes
3 replies
1.7K views
python file for coding potential calculator
cpc2.py
updated by atharvakarkare14 4 • | written by Ashok 0
0 votes
1 reply
728 views
Failed kmer content
kmer illumina ngs
updated by Ram 4.5K • | written by Kasturi 0
0 votes
0 replies
726 views
Forum: Improvement on automatic annotation of single-cell RNA-seq data from the literature using LLM
annotation scrna llm
written by yxwucq 0
0 votes
0 replies
518 views
How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
hmmcopy copy-number-analysis r
updated by Ram 4.5K • | written by SSSJec 0
0 votes
6 replies
2.0K views
How to slice a gvcf file with tabix?
tabix bed gvcf
written by Sd 0
0 votes
2 replies
975 views
Help with Base quality Score Recalibration (BQSR) using GATK
gatk bqsr
written by sainavyav22 0
0 votes
1 reply
719 views
Identification of Transgene insertion sites
transgene whole-genome-sequencing transgene-sites
updated by Ram 4.5K • | written by Cameron.walker9900 0
0 votes
8 replies
2.0K views
Error in cnetplot enrichplot package
r
updated by Ram 4.5K • | written by Farhad 0
2 votes
9 replies
4.6K views
Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
fastq
updated by Istvan Albert 10K • | written by Κοσμάς 2
0 votes
0 replies
528 views
Pairwise alignment and Ka/Ks computation
pairwise-alignment genomics ka-ks
updated by Ram 4.5K • | written by maxime.policarpo 20
0 votes
3 replies
2.1K views
Genbank vs SRA
ncbi genbank genomics sra
updated by Mensur Dlakic 3.0K • | written by c_u 53
0 votes
0 replies
458 views
Analysis of the gene family of a genome.
genome gene-family
updated by Ram 4.5K • | written by san96 19
0 votes
0 replies
572 views
File with NCBI summary or Uniprot description
annotation visualisation ncbi uniprot rna
updated by Ram 4.5K • | written by Amélie 0
0 votes
0 replies
674 views
Meta analysis of two GWAS summary statistics: one study is case-control and the other is quantitative
gwas meta-analysis
updated by Ram 4.5K • | written by Pine 2
0 votes
3 replies
3.5K views
Problem to remove subset of patients with plink
plink ped
updated by chrchang523 1.1K • | written by Ginevra 1
0 votes
4 replies
1.7K views
from row count to tpm
tpm row-count normalization
updated by Ram 4.5K • | written by michelafrancesconi9 3
0 votes
8 replies
3.0K views
Downsampling fastq file
downsample fastq
written by marco.barr 22
2 votes
3 replies
1.9K views
How to establish haplotype-specific gene expression levels
rna-seq haplotype
updated by dsull 781 • | written by javanokendo 6
0 votes
1 reply
593 views
tbtool
tbtool
updated by Ram 4.5K • | written by Raman 0
0 votes
10 replies
3.8K views
Low mapping rate with Salmon
rna-seq salmon quantification
updated by i.sudbery 2.3K • | written by Patadu94 0
1 vote
3 replies
1.5K views
Getting the nucleotide sequence of proteins, having their UniProt IDs
nucleotide genomic sequence uniprot proteins
updated by GenoMax 16K • | written by Mariana 5
0 votes
1 reply
734 views
Displaced fragment length distribution in ATAC-seq
atac-seq nucleosome fragment
updated by ATpoint 9.1K • | written by enanoide 0
0 votes
0 replies
570 views
Help with finding conferences in immuno-informatics/virology
virology conferences immunology
written by manaswwm 64
1 vote
3 replies
1.4K views
KissDE and batch effect
kissde kissplice
written by david.b.rombaut 1
0 votes
0 replies
362 views
Filtering most similarly expressed gene (contrary to differential expression gene) with NOISeq?
noiseq
written by alifafiq1 0
64 votes
72 replies
27K views
Tutorial: Clustering of DAVID gene enrichment results from gene expression studies
enrichment david
written by Kevin Blighe 9.0K
0 votes
0 replies
481 views
How to get somatic variation based on RNA-seq data?
rna-seq variation somatic
written by feather-W 0
1 vote
4 replies
1.4K views
interpretartion of a vcf file
calling genotype ont variant diploid
written by samuelkalandarov2002 2
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