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0 replies
1.0K views
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
primers trinity
written by mathavanbioinfo mathavanbioinfo
0 votes
1 reply
1.2K views
GTF file from Stringtie to R Studio for either Ballgown or DESeq2
stringtie cufflinks ballgown deseq2
updated by Ram Ram • written by Nina • Nina
0 votes
5 replies
4.1K views
MEGA Analysis Issue on High-Performance Computer
phylogenetic-analysis mega
updated by Mensur Dlakic Mensur Dlakic • written by Giorgio • Giorgio
0 votes
1 reply
1.3K views
Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits
shotgun metagenomics blastp taxonomy
updated by GenoMax GenoMax • written by rebecca.calvo • rebecca.calvo
2 votes
5 replies
2.2K views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated by Jesse • Jesse • written by Ann Ann
0 votes
0 replies
765 views
agilent microarray gpl data does not have gene symbol column
microarray agilent gpl
updated by Ram Ram • written by mja • mja
0 votes
0 replies
616 views
scRNA Cluster frequency
cv pca scrna cluster-frequency
written by Nitin • Nitin
0 votes
5 replies
2.7K views
Duplicate marking, read names, and the SRA
sra markduplicates
updated by GenoMax GenoMax • written by Luka • Luka
0 votes
0 replies
647 views
Chemical structure validation
structure cap validation metabolite
written by Rodolfo Adrián • Rodolfo Adrián
0 votes
8 replies
3.5K views
Cellranger count error: Input FASTQ file ended prematurely
scrna-seq cellranger starsolo 10x
updated by swbarnes2 swbarnes2 • written by bp22 • bp22
0 votes
1 reply
855 views
Downloading the raw microarray data from GEO
.gpr microarray .cel
updated by GenoMax GenoMax • written by bioyas • bioyas
0 votes
0 replies
702 views
Copy number variation plot
copy-number-variation genomics
updated by Ram Ram • written by Emmi • Emmi
0 votes
5 replies
2.0K views
RNA seq differential expression analysis
rna-seq normalization
updated by BioinfGuru BioinfGuru • written by rrehimi • rrehimi
0 votes
1 reply
764 views
Could you please assist in identifying this cluster?
single-cell
updated by Ram Ram • written by carolofharvest • carolofharvest
0 votes
9 replies
3.7K views
Tool: CANEapp, a user-friendly application for automated next generation transcriptomic data analysis
rna-seq
updated by a.l.b.e.r.to.2.5.s.an.ic.s. • a.l.b.e.r.to.2.5.s.an.ic.s. • written by dvelmeshev • dvelmeshev
0 votes
7 replies
6.9K views
Memory usage of picard Samsort
picard sortsam
updated by ATpoint ATpoint • written by boymin2020 • boymin2020
4 votes
13 replies
11K views
Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
r ubuntu linux bioconductor rstudio
updated by ATpoint ATpoint • written by BioinfGuru BioinfGuru
0 votes
1 reply
1.2K views
Plink merge errors.
cygwin64 bed plink
written by Dinmukhamed • Dinmukhamed
0 votes
0 replies
597 views
Conversion to tree format
plink bed figtree splitstree
updated by Ram Ram • written by Dinmukhamed • Dinmukhamed
0 votes
0 replies
613 views
miRDeep2: How to get the read counts
mirdeep2
written by Atul K. • Atul K.
0 votes
4 replies
1.9K views
Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (without Blat)
mapping
written by rahu • rahu
0 votes
0 replies
634 views
Lncipedia GTF file error
proteomics
updated by Ram Ram • written by atharvakarkare14 • atharvakarkare14
6 votes
3 replies
7.2K views
Tutorial: Prediction of Ribosomal RNA Genes Using RNAmmer Software
genome annotation rnammer rrna
written by Arslan Tariq • Arslan Tariq
1 vote
3 replies
1.8K views
Free/open source 23andme-like analysis
snps genomics ngs vcf
updated by swbarnes2 swbarnes2 • written by noodle noodle
0 votes
2 replies
1.3K views
How to get the reference panel for UKBB
ukbb gwas clump
written by 航太郎 • 航太郎
0 votes
12 replies
4.4K views
Downloaded pdb's on rcsb.org
rcsb pdb
updated by Ram Ram • written by iamsmor • iamsmor
0 votes
0 replies
510 views
create genewise sync file in popoolation
popoolation
updated by GenoMax GenoMax • written by N.Y.Wiyana-Hewage • N.Y.Wiyana-Hewage
0 votes
2 replies
1.0K views
error in coding potential calculator CPC2
cpc cpc2 coding-potential
written by Ashok • Ashok
0 votes
2 replies
1.2K views
miRNAs quantification using mirdeep2 tool
differential-expression mirdeep2 mirna
written by Ashok • Ashok
1 vote
0 replies
842 views
Variant Generation Using Longshot
long-reads variant-calling ont minion longshot
updated by Ram Ram • written by samuelkalandarov2002 • samuelkalandarov2002
0 votes
2 replies
1.4K views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control snv qc snp
written by _quantum_girl_ • _quantum_girl_
0 votes
0 replies
966 views
traying to make a maf from an already annotated vcf
vcf vcf2maf maf maftools vep
written by Javier • Javier
0 votes
4 replies
2.3K views
What happened to Tombo Re-squiggle
tombo resquiggle ont
updated by Ram Ram • written by turcoa1 • turcoa1
0 votes
0 replies
768 views
Pruning with plink finds a majority of SNPs in very high LD
ld snp plink pruning
written by enferdeflame • enferdeflame
0 votes
1 reply
1.1K views
Difference when using difference number of pathways score to compare between 3 groups
gsva limma
updated by Gordon Smyth Gordon Smyth • written by Chris • Chris
0 votes
0 replies
701 views
News: Online course: Meta-analysis in R
meta-analysis statistics r
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
9 replies
2.5K views
How can I retrieve wheat lysine non-acetylated sequences from the UniProt database?
uniprot
updated by Elisabeth Gasteiger Elisabeth Gasteiger • written by Jacky • Jacky
0 votes
1 reply
1.3K views
10x VDJ (TCR/BCR) BAM to fastq
tcr vdj bcr 10x
updated by GenoMax GenoMax • written by predeus predeus
0 votes
1 reply
733 views
DEseq2
rna-seq deseq2
updated by Ram Ram • written by rrehimi • rrehimi
0 votes
0 replies
618 views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
netlogo individual-based-models agent-based-models
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
2 replies
1.7K views
Assume "yes" as the answer to any prompts with bioconda
docker container bioconda
updated by Juke34 Juke34 • written by njornet • njornet
1 vote
0 replies
1.9K views
Tutorial: DNA Methylation: Sequencing Techniques
wgbs rrbs
written by Novogene • Novogene
0 votes
1 reply
1.1K views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree microbiome
updated by Ram Ram • written by Muhammad • Muhammad
0 votes
3 replies
1.5K views
Korean human genome reference file
gwas reference imputation
written by SeoG • SeoG
0 votes
0 replies
490 views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau-score tspex
updated by Ram Ram • written by bioinfo223 • bioinfo223
0 votes
0 replies
580 views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpeff
written by ekirsch • ekirsch
0 votes
1 reply
1.1K views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow python-apollo apollo
written by renan.igor • renan.igor
0 votes
1 reply
935 views
Pediococcus acidilactici sequence analysis
blast gene-ontology
updated by Ram Ram • written by anasjamshed anasjamshed
2 votes
1 reply
1.6K views
What is the normalization status of metabric data?
metabric normalization microarray cbioportal
updated by etiennedanis • etiennedanis • written by DareDevil DareDevil
0 votes
0 replies
1.4K views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
written by synat.keam • synat.keam
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