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0 votes
1 reply
919 views
Normalize scRNAseq data to housekeeping genes to compare several datasets
rna-sequencing housekeeping single-cell normalization
updated by ATpoint 9.1K • | written by AaronJaime 0
0 votes
2 replies
1.2K views
BLAST using both nucleotides and taxonomic local databases
blast ncbi taxid taxonomy
updated by GenoMax 16K • | written by Begonia_pavonina 22
0 votes
3 replies
3.6K views
why renaming Idents in Seurat object doesn't work?
seurat renameidents r
written by Assa Yeroslaviz 197
1 vote
2 replies
1.3K views
ScRNAseq-How to correctly choose cell type marker genes
cellassign cell-markers
written by Francesco 2
1 vote
7 replies
2.3K views
ScRNA data question
scrna vlnplot samples
updated by bk11 312 • | written by starswillfade 1
0 votes
0 replies
633 views
News: Master Meta-analysis with R (May 13-16) - Online!
meta-analysis statistics r
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
0 replies
658 views
How to calculate correlation coefficient for chipseq?
chipseq bigwigsummary deeptools correlation
written by Emily 2
1 vote
0 replies
1.1K views
How to calculate reliable Ka/Ks or dN/dS ratio for genes of interest from VCF file
dnds kaks vcf
written by rohitsatyam102 95
0 votes
0 replies
851 views
how to read graph_test output of monocle 3
monocle3
written by synat.keam 12
1 vote
0 replies
909 views
Job: CTO/founding engineer role at Voyant Bio
engineer
written by Assaf 1
0 votes
1 reply
1.6K views
GAPIT p-value significance threshold
gapit p-value gwas
updated by ginellegrenier 0 • | written by Clayton 0
0 votes
4 replies
1.4K views
Why gatk VariantAnnotator required bam and coverage files
gatk variantannotator
written by QX 9
0 votes
1 reply
805 views
Finding orthologs between genome error
oma omabrowser
updated by Adrian Altenhoff 116 • | written by hemantcnaik 0
1 vote
0 replies
1.2K views
Why not use iBAQ for calculating differential abundance of proteins?
protein maxquant
written by Aspire 43
0 votes
5 replies
1.9K views
Figures are disappeared from html report of SnpEff
html snpeff
written by Bushra Bibi 8
0 votes
4 replies
1.7K views
Highest variable features in single cell data
single-cell
written by carolofharvest 6
0 votes
1 reply
862 views
Network Alignment
plugin cytoscape cytomcs
updated by Scooter 31 • | written by SKY 6
0 votes
4 replies
3.9K views
How could I generate a gi_taxid_nucl.dmp file similar to the one previously hosted by NCBI?
ncbi metagenomics centrifuge gi_taxid_nucl.dmp taxonomy
updated by ZhangYuanfeng 0 • | written by Frazier Baker 0
0 votes
3 replies
1.3K views
PCA plot
deseq2 pcaplot
updated by LauferVA 497 • | written by Aaliya 1
3 votes
5 replies
2.8K views
Tutorial: how to combine multiple RNAseq count files into a single dataframe in R and unix
unix rnaseq r
updated by Mbofire 0 • | written by Ming Tommy Tang 469
0 votes
4 replies
3.3K views
Lositan freezing when generating selection table
lositan
updated by evawillms183 0 • | written by andrepleao 0
0 votes
0 replies
562 views
Can you give me an example of a small globular protein (PDB) that has disordered alpha-carbons?
protein pdb alpha-carbon
written by 4fzcgueyp5 0
0 votes
3 replies
1.4K views
clustalo - align milions of short seq, memory issue
memory clustalo
updated by Mensur Dlakic 3.0K • | written by emma.a 13
0 votes
2 replies
1.2K views
Annovar using R package
annovar gnomad r
written by DKA 4
0 votes
2 replies
1.1K views
Creating Synthetic Sequences for a ML Model
dna ml
updated by Mensur Dlakic 3.0K • | written by biochugs 0
1 vote
8 replies
2.7K views
PCA plot (Suggestions Needed)
deseq2 pcaplot
updated by swbarnes2 1.5K • | written by Aaliya 1
0 votes
9 replies
3.9K views
Adding CB tag to bam file
samtools bam
written by Maria 0
0 votes
2 replies
1.7K views
AGeNT LocatIt
agent locatit wes umi duplicates
updated by barslmn 245 • | written by jhy 1
0 votes
5 replies
1.5K views
Is it possible to get a list of representative genomes from a past RefSeq release?
representative ncbi asembly refseq
updated by GenoMax 16K • | written by Bertalan_Takacs 14
0 votes
0 replies
565 views
One error problem occurred caused by data type during using GDCprepare to handle BRCA data
tcga gdcprepare
updated by Ram 4.5K • | written by glaciya2018 0
0 votes
0 replies
1.1K views
roary not working with pgap output gff files with fasta sequence but works with prokka's gff outputs
pangenome pgap ncbi roary prokka
written by pramach1 4
0 votes
13 replies
6.6K views
Tax4Fun2 - error
tax4fun silva blast
updated by drstalinantony28 0 • | written by ymj 1
0 votes
1 reply
1.0K views
GEMMA GWAS how to specify factor or numerical for covariates
covariate gemma gwas
updated by Sofia 0 • | written by mawigoj318 0
0 votes
0 replies
702 views
Sequence BLAST in plus/minus and plus/plus
blast crispr strand sequencing
written by Sergio A.S. 1
0 votes
7 replies
2.4K views
To get p-values for the TPM
p-value tpm rsem
updated by dsull 781 • | written by VITALA 0
0 votes
5 replies
1.9K views
different FeatureCounts output for the same data
fpkm counts rsubread rna-seq
updated by Istvan Albert 10K • | written by sehriban.buyukkilic 1
0 votes
0 replies
888 views
Alternative splicing analysis using SUPPA tool - how to normalise counts?
rna-seq single-cell suppa alternative-splicing
updated by Ram 4.5K • | written by newuser2024 0
0 votes
2 replies
1.0K views
alignment result
rna-seq samtools hisat2
written by ahmad.sajad4541 0
0 votes
0 replies
561 views
News: hands-on introduction to generalized linear models (GLMs) using R
generalized-linear-models glm r
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
2 replies
1.5K views
Wilcox test using data slot (log normalized count values) of scRNA-seq between two groups
scrnaseq
written by mropri 17
0 votes
2 replies
1.0K views
HaplotypeCaller - only SNPs
haplotypecaller gatk
updated by Bushra Bibi 8 • | written by lorena9132 1
0 votes
0 replies
762 views
AttributeError: module 'scvelo' has no attribute 'pp
loomfile scvelo scipy anndata numpy
written by Kash 11
0 votes
2 replies
1.4K views
Gene set enrichment analysis differences between 2020 and 2024
gene-ontology
updated by geneontologyhelp 57 • | written by catherine.teyssier 0
0 votes
1 reply
757 views
Blasting two protein sequences vs two nucleotide sequences
gene-hunting blast
updated by Istvan Albert 10K • | written by Abeer 0
0 votes
4 replies
2.3K views
Should I use unpaired reads from trimmomatic
rna-seq qc trimmomatic
updated by swbarnes2 1.5K • | written by dxj294 0
0 votes
1 reply
806 views
How to solve this RoseTTAFold colaboratory error?
modeling google colaboratory rosettafold protein
updated by Mensur Dlakic 3.0K • | written by benguyarenbeyaz98 0
0 votes
2 replies
1.1K views
How to calculate identity percentage between proteins contained in a FASTA file?
protein fasta alignment
updated by Ram 4.5K • | written by v.berriosfarias 14
0 votes
1 reply
2.4K views
Seurat merge and batch correction
seurat
updated by Ram 4.5K • | written by sooni 2
1 vote
1 reply
1.2K views
Herald: The Biostar Herald for Tuesday, April 23, 2024
herald
updated by Pierre Lindenbaum 17K • | written by Biostar 380
0 votes
1 reply
829 views
Including plasmid in alignment
bacteria transcriptomics bowtie2 star
written by heelpPlease 0
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