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0 votes
6 replies
1.9K views
How to slice a gvcf file with tabix?
tabix bed gvcf
written by Sd • Sd
0 votes
2 replies
967 views
Help with Base quality Score Recalibration (BQSR) using GATK
gatk bqsr
written by sainavyav22 • sainavyav22
0 votes
1 reply
707 views
Identification of Transgene insertion sites
transgene whole-genome-sequencing transgene-sites
updated by Ram Ram • written by Cameron.walker9900 • Cameron.walker9900
0 votes
8 replies
2.0K views
Error in cnetplot enrichplot package
r
updated by Ram Ram • written by Farhad • Farhad
2 votes
9 replies
4.6K views
Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
fastq
updated by Istvan Albert Istvan Albert • written by Κοσμάς • Κοσμάς
0 votes
0 replies
516 views
Pairwise alignment and Ka/Ks computation
pairwise-alignment genomics ka-ks
updated by Ram Ram • written by maxime.policarpo maxime.policarpo
0 votes
3 replies
2.1K views
Genbank vs SRA
ncbi genbank genomics sra
updated by Mensur Dlakic Mensur Dlakic • written by c_u c_u
0 votes
0 replies
449 views
Analysis of the gene family of a genome.
genome gene-family
updated by Ram Ram • written by san96 • san96
0 votes
0 replies
564 views
File with NCBI summary or Uniprot description
annotation visualisation ncbi uniprot rna
updated by Ram Ram • written by Amélie • Amélie
0 votes
0 replies
665 views
Meta analysis of two GWAS summary statistics: one study is case-control and the other is quantitative
gwas meta-analysis
updated by Ram Ram • written by Pine • Pine
0 votes
3 replies
3.5K views
Problem to remove subset of patients with plink
plink ped
updated by chrchang523 chrchang523 • written by Ginevra • Ginevra
0 votes
4 replies
1.7K views
from row count to tpm
tpm row-count normalization
updated by Ram Ram • written by michelafrancesconi9 • michelafrancesconi9
0 votes
8 replies
2.9K views
Downsampling fastq file
downsample fastq
written by marco.barr • marco.barr
2 votes
3 replies
1.7K views
How to establish haplotype-specific gene expression levels
rna-seq haplotype
updated by dsull dsull • written by javanokendo • javanokendo
0 votes
1 reply
587 views
tbtool
tbtool
updated by Ram Ram • written by Raman • Raman
0 votes
10 replies
3.7K views
Low mapping rate with Salmon
rna-seq salmon quantification
updated by i.sudbery i.sudbery • written by Patadu94 • Patadu94
1 vote
3 replies
1.5K views
Getting the nucleotide sequence of proteins, having their UniProt IDs
nucleotide genomic sequence uniprot proteins
updated by GenoMax GenoMax • written by Mariana • Mariana
0 votes
1 reply
732 views
Displaced fragment length distribution in ATAC-seq
atac-seq nucleosome fragment
updated by ATpoint ATpoint • written by enanoide • enanoide
0 votes
0 replies
572 views
Help with finding conferences in immuno-informatics/virology
virology conferences immunology
written by manaswwm manaswwm
1 vote
3 replies
1.4K views
KissDE and batch effect
kissde kissplice
written by david.b.rombaut • david.b.rombaut
0 votes
0 replies
361 views
Filtering most similarly expressed gene (contrary to differential expression gene) with NOISeq?
noiseq
written by alifafiq1 • alifafiq1
64 votes
72 replies
27K views
Tutorial: Clustering of DAVID gene enrichment results from gene expression studies
enrichment david
written by Kevin Blighe Kevin Blighe
0 votes
0 replies
473 views
How to get somatic variation based on RNA-seq data?
rna-seq variation somatic
written by feather-W • feather-W
1 vote
4 replies
1.4K views
interpretartion of a vcf file
calling genotype ont variant diploid
written by samuelkalandarov2002 • samuelkalandarov2002
0 votes
0 replies
651 views
News: Online course: DNA methylation
pacbio nanopore dnamethylation evolution
written by Physalia-courses Physalia-courses
0 votes
0 replies
1.0K views
Job: Ensembl Plants Senior Bioinformatician
ebi embl genomics ensembl
written by Ben Moore Ben Moore
0 votes
4 replies
2.4K views
What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
chip-seq
written by HyperEvo • HyperEvo
0 votes
2 replies
847 views
RNA-seq bacteria contamination
rna-seq
written by sh • sh
0 votes
2 replies
894 views
Result of running of p3_in.pl
primer3
updated by GenoMax GenoMax • written by nasri • nasri
0 votes
1 reply
916 views
FAM FILE
fam
updated by Ram Ram • written by Eleonora • Eleonora
0 votes
0 replies
552 views
Imputation advice
imputation
written by kl • kl
0 votes
5 replies
1.5K views
Per base sequence content error in RNAseq analysis
rna-seq analysis
updated by GenoMax GenoMax • written by ahmad.sajad4541 • ahmad.sajad4541
0 votes
0 replies
668 views
Trimming best practices for SNP calling
trimming snp trimmomatic
written by Enrique • Enrique
0 votes
5 replies
1.9K views
SLURM submission problem: Indexing the Reference Genome is not done in STAR
align rna-seq linux star
written by n_navy • n_navy
0 votes
0 replies
542 views
Correct way of reducing predictive model complexity
lasso glmnet predictvemodeling regression
written by sativus • sativus
1 vote
3 replies
1.8K views
Interpretting IGV output
igv
updated by Carlo Yague Carlo Yague • written by Bushra Bibi Bushra Bibi
0 votes
1 reply
733 views
homology modelling using swiss model
homology-modeling swiss-model
updated by colindaven colindaven • written by Ayush • Ayush
0 votes
0 replies
410 views
Difficulties getting **the adjacency file** necessary for **aracne2regulon** function.
viper marina aracne
written by Biostars2200 • Biostars2200
0 votes
5 replies
1.7K views
DYH17 Structure Prediction
blast protein-structure-prediction
written by anasjamshed anasjamshed
0 votes
0 replies
597 views
CIRIquant: ValueError: file has no sequences defined (mode='rb') - is it SAM/BAM format? Consider opening with check_sq=False
ciriquant
updated by Carlo Yague Carlo Yague • written by Atul K. • Atul K.
0 votes
2 replies
1.2K views
p-value and Boneferroni adjusted p-value the same in R
bonferroni r statistics p-value fisher
written by kristiewyleung • kristiewyleung
0 votes
5 replies
2.3K views
Marking duplicates using UMIs
umi deduplication
written by Lipika • Lipika
0 votes
0 replies
540 views
How to extract the mutations specific to cancer after variant annotation
variant-annotation
updated by Ram Ram • written by sainavyav22 • sainavyav22
0 votes
0 replies
694 views
Bacterial genome alignment with mauve
bacteria mauve genome
written by rthapa • rthapa
0 votes
0 replies
696 views
Reparametrization of .str (param penalty > 100) File from CGenFF for Ligand Simulation in GROMACS
simulation cgenff gromacs vmd
written by Mamatha Y S • Mamatha Y S
0 votes
0 replies
603 views
News: upcoming online statistical courses
statistics r data-analysis
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
4 replies
1.7K views
how to find genes that are significantly expressed in brain cortex samples
rna-seq gene-expression
updated by ATpoint ATpoint • written by rheab1230 • rheab1230
0 votes
2 replies
1.1K views
bam merging for archaic samples
samtools bam
updated by Ram Ram • written by Matteo Ungaro • Matteo Ungaro
0 votes
6 replies
1.8K views
Filtering sam or bam file with maximum matching region
crisper-edited alignment match
written by Bushra Bibi Bushra Bibi
0 votes
1 reply
966 views
Removing Illumina microarray probes with no expression HumanHT-12v4
microarray humanht-12v4 illumina
updated by Gordon Smyth Gordon Smyth • written by Bioinformatician • Bioinformatician
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