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0 votes
7 replies
2.9K views
Post-imputation plot
michigan-imputation-server quality-control
updated by LChart 518 • | written by kl 2
0 votes
1 reply
1.0K views
How to find overlap of clusters in two seurat porject
clustering seurat
updated by Adam 3 • | written by J 0
0 votes
3 replies
1.1K views
DESeq2 processing problems
deseq2 r
updated by ATpoint 9.1K • | written by jagdish7921 0
0 votes
1 reply
1.6K views
cnetplot category names are too long
clusterprofiler rna-seq enrichplot cnetplot
updated by Ram 4.5K • | written by carov 0
0 votes
1 reply
727 views
Mutect2 for mitochondria variant discovery
mutect2 mitochondria
updated by Ram 4.5K • | written by ernestine.kubi 0
0 votes
0 replies
527 views
Tools to circularise the ion torrent bacterial genome assembly
iontorrent bacteria circularise
written by VITALA 0
0 votes
2 replies
984 views
POSSUM not working due to incompatible pssm file
fasta pse-pssm pssm possum
written by rianna.collins 0
0 votes
1 reply
667 views
Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq
rna-seq
updated by i.sudbery 2.3K • | written by Edmond 0
0 votes
0 replies
634 views
What open-source tools can determine the coverage/completion of a pathway based on EC numbers?
metagenomics metacyc enzyme pathway genomics
written by O.rka 75
0 votes
1 reply
1.4K views
after selecting specific GO terms to plot, cneplot is not showing any color for genes, GO terms and only showing lines without nodes.
cneplot
updated by Ram 4.5K • | written by Dr Huma Naz 0
0 votes
2 replies
2.0K views
p-value in CIBERSORT
cibersort p-value
written by michelafrancesconi9 3
0 votes
5 replies
1.5K views
Telescope issue
telescope rna-seq
updated by GenoMax 16K • | written by eleven11 0
3 votes
6 replies
3.7K views
Programmatically retrieving positions of protein active site residues
uniprot pdb proteins
updated by me 76 • | written by Mariana 5
0 votes
1 reply
1.0K views
Adjust pvalue in R with different approach give me all different outcome
statistics r p-value
updated by Ram 4.5K • | written by Jonathan Yoou 7
0 votes
2 replies
1.0K views
Minimum RAM and Storage requirement for creating PSSM using ncbi-blast-2.2.30+-x64-linux
blast pssm
written by Nafi 0
0 votes
3 replies
1.2K views
What does 'bundle_uuid' refer to in this metadata sheet?
sra illumina geo metadata
updated by GenoMax 16K • | written by jeffrey.maurer.informatics 0
0 votes
3 replies
1.7K views
ERROR When Using Ensembl Plants Biomart Wget API
biomart plant ensembl
written by Dora 1
0 votes
0 replies
793 views
News: Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
bionumpy python numpy
updated by Ram 4.5K • | written by Chakri 5
0 votes
2 replies
786 views
RNA editing sites based on DNA seq and RNA seq
rna-editing
written by Ahiad Chen Zion 0
0 votes
5 replies
1.7K views
Introduce SNPs on FASTA
simulation snps haplotypes pharmacogenetics
written by Riccardo 1
0 votes
0 replies
596 views
News: Online course: Meta-analysis in R - last 2 seats left
meta-analysis statistics r
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
0 replies
725 views
Somatic variant calling with Mutect2 using 2 matched-normals for one sample
cancer mutect variant-calling gatk somatic-variants
updated by Ram 4.5K • | written by Alexandros 0
0 votes
1 reply
785 views
unable to get feature count results
featurecounts
updated by Ram 4.5K • | written by Ravita 0
0 votes
3 replies
932 views
KEGG Pathways
r rna-seq
updated by Ram 4.5K • | written by Sudip 0
1 vote
6 replies
5.6K views
Taking the difference of two VCFs (or removing singletons)
genome sequencing singleton snp filter
updated by Andres 2 • | written by hermathena 4
0 votes
0 replies
985 views
Seurat object reductions (PCA, UMAP,..) after subsetting data
seurat
written by Nona 9
0 votes
1 reply
654 views
Deseq2
deseq2
updated by Jack Tierney 45 • | written by Sudip 0
0 votes
1 reply
1.5K views
Polishing genome assembly
polishing nanopore pacbio
updated by Michael Dondrup 5.6K • | written by Lissa Cruz Saavedra 0
0 votes
3 replies
1.6K views
Integrate transcriptomic data and proteomics data.
omics
updated by Lluís R. 124 • | written by 이민경[학생](대학원 융합의과학과) 0
0 votes
2 replies
819 views
MA plot of shrunken fold change
ma-plot deseq2
updated by ATpoint 9.1K • | written by Sudip 0
0 votes
2 replies
931 views
Need help for downloading arabdopsis thaliana reference genome fasta file and gtf file
arabidopsis-thaliana gtf reference-genome
updated by Ram 4.5K • | written by Ravita 0
0 votes
3 replies
1.2K views
Gene Specific coverage from WGS data
wgs sars-cov2
updated by Ram 4.5K • | written by Adyasha 0
0 votes
0 replies
622 views
human gut metagenome taxonomy profile table and KO profile table from big cohort
metagenome gut human
written by fanglujing 6
0 votes
0 replies
561 views
Are some metagenomes too complex for MAGs?
metagenomics metagenome mags assembly
written by Jacob 0
0 votes
3 replies
2.0K views
Why cd-hit-est not work when sequence identity threshold<0.95？
genome cluster sequence
updated by weidonglu 0 • | written by JZX 0
0 votes
4 replies
2.3K views
Perfom a Gene Ontology Analysis from GO terms txt file
rna-seq go
updated by Ram 4.5K • | written by Hamtaro 6
0 votes
1 reply
797 views
Differential Accessibility
diffbind
updated by Ram 4.5K • | written by shlo12 2
0 votes
3 replies
1.7K views
Landmark gene selection in L1000.
l1000 landmark-gene cmap
updated by GenoMax 16K • | written by kim 0
0 votes
2 replies
1.3K views
Extract protein sequence
fasta alignment blast
written by anna 2
0 votes
3 replies
1.5K views
Is it possible to bulk download files from GEO repository?
rna-seq galaxy tanscriptomics
updated by noodle 65 • | written by WUSCHEL 94
0 votes
1 reply
804 views
metagenomic virome quality assessment
viromics metagenomics
updated by Ram 4.5K • | written by Petchimuthu 0
0 votes
7 replies
2.0K views
FastQC Quality per tile and per sequence behaving strange after using Cutadapt
fastqc cutadapt illumina tile paired-end
written by Sergio A.S. 1
0 votes
0 replies
681 views
Using limma in methylation EM-seq?
em-seq methylation
written by Lluís R. 124
0 votes
7 replies
2.6K views
Very low RNA splicing rate for pulmonary AT2 cells
rna-velocity scvelo scrna-seq splicing
written by e.r.zakiev 26
0 votes
0 replies
531 views
Synteny analysis
bacterial synteny genome
updated by GenoMax 16K • | written by Namil 0
0 votes
4 replies
1.2K views
Genbank File Format
gbkformat
written by alenew.am 1
0 votes
5 replies
3.3K views
How should I make kallisto indexes?
kallisto
updated by dsull 781 • | written by bioinfo 19
0 votes
0 replies
708 views
Assist me in determining whether the analysis process using the limma package has been executed correctly
limma arrayexpress differentialexpression geoquery
written by SSSJec 0
0 votes
3 replies
1.0K views
Software to separate reads from different individuals
software development nanopore
updated by GenoMax 16K • | written by njornet 2
0 votes
2 replies
2.8K views
How to update R on ubuntu
installation update r apt-get
written by Bosberg 5
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