Differential Accessibility
Hi I have generated .narrowPeak files using genrich and normalised .bw files using bamCoverage. I have 3 donors and treated and control samples for both B cells & T cells. This is what my samples.csv file looks like: (note, it contains both b & t and .narrowPeak for each replicate) SampleID,Condition,CellType,Donor,PeakFile,BigWigFile
when I use the following code:
diff_bind_obj <- dba(sampleSheet = sample_sheet, peakFormat = "narrow", minOverlap = 2)
I get this when I print the diff_bind_obj dba object sampleSheet file
Kindly help! It would be greatly appreciated
dba_object:
samplesheet:
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