If you deal with RNA sequencing data analysis, please take a look at CANEapp , a new application developed by our team at University of Miami:
The uniqueness of CANEapp is that it allows you to perform analysis of RNA-seq data without the need of using the terminal or passing commands to the server and completely automated the analysis process. The user interface runs on your personal computer and connects to the server, where an automated algorithm takes care of the analysis. Therefore, it can be of interest for pure biologists, as well as for bioinformatitians as a tool for RNA-seq analysis automation.
If you are interested read the CANEapp paper:
If you have questions, suggestions, detect bugs or experience problems, please email me (Dmitry) or visit our Google Group:
CANEapp is an open-source program; the source code is here: