Struggling to lift genome builds
Hello,
I am new to GWAS and trying to lift my data from build 38 to 37 using either plinkliftover leftover or liftOverPlink.py but with both the issue is that it cannot recode the PED file. The MAP file is lifted appropriately each time but the PED file continues to be a problem and I therefore then cannot recode to the big/bed/fam files I want to go on to use in Plink.
Has anyone had this before and can help me out?
Many thanks,
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