Korean human genome reference file

Question

[SeoGyun]

How can I get Korean reference file..? Korean reference is no longer provided by sites..

[GenoMax]

From NCBI: https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_001712695.1/

Use the Download button or curl/datasets.

[SeoGyun]

Thanks..... But I want to do imputation, so I have to make it as a vcf file, but the site only has a fatsa file....

Answer 1

[colindaven]

Is is this one - KOREF ? There might be multiple versions. https://www.ncbi.nlm.nih.gov/bioproject/PRJNA294231/

If it is, then take that and download from NCBI, or alternatively from the EBI - mostly a bit easier I find:

https://www.ebi.ac.uk/ena/browser/view/GCA_001712695.1