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1.2K views
News: Online Course - A Practical Introduction to NGS Data Analysis (February 10-12, 2025)
workshop rnaseq illumina dnaseq variantcalling
written by ecSeq Bioinformatics • ecSeq Bioinformatics
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10 replies
4.8K views
TOM matrix generated by WGCNA package in R
wgcna
updated by GenoMax GenoMax • written by Dude • Dude
0 votes
1 reply
1.2K views
WIG files - bulk RNA-seq
rnaseq wig normalisation fastq
updated by rfran010 • rfran010 • written by pinkclouds • pinkclouds
0 votes
2 replies
1.9K views
Recommended reliable enrichment tool
ontology enrichr enrichment
updated by geneontologyhelp • geneontologyhelp • written by noamizc • noamizc
0 votes
4 replies
2.0K views
Extracting Variant Sequences from 1000 Genomes VCF File and Mapping to Canonical Gene Sequence
bcftools genome vcf wgs
updated by cmdcolin cmdcolin • written by Rohan • Rohan
2 votes
5 replies
4.0K views
Comparing SV calls produced by VG call on a Minigraph-Cactus produced Pangenome Graph vs. a linear reference
minigraph-cactus variant-calling structural-variant vg
updated by GenoMax GenoMax • written by peterdfields • peterdfields
0 votes
7 replies
2.7K views
Forum: Premade RNA-seq pipeline or custom
rna-seq pipeline
updated by i.sudbery i.sudbery • written by noodlejackson • noodlejackson
0 votes
2 replies
971 views
MT and rRNA gene expression in bulk RNA-seq sample QC filtering
rna-seq
written by noodlejackson • noodlejackson
0 votes
1 reply
839 views
Pocket comparison of homologuos proteins suitable to inform mutagenesis
prokaryotes structure
updated by dthorbur dthorbur • written by Schmoho • Schmoho
0 votes
1 reply
659 views
What are your thoughts on automatic segmentation of metastases using Deep Learning Models?
metastases deep-learning
updated by ATpoint ATpoint • written by clara-28 • clara-28
1 vote
0 replies
25K views
Herald: The Biostar Herald for Tuesday, January 07, 2025
herald
written by Biostar Biostar
0 votes
1 reply
822 views
Bulk-RNA-Seq integrate control samples.
modelmatrix rna-seq
updated by i.sudbery i.sudbery • written by fabian • fabian
2 votes
3 replies
1.4K views
How to check SRA file download possible corrupted?
sra
updated by Istvan Albert Istvan Albert • written by xqyn • xqyn
3 votes
2 replies
1.4K views
How to Resolve Reference Mismatch While Extracting Gene Variants from 1000 Genomes Project Phase 3 VCF?
samtools bcftools grch38 genome vcf
written by Rohan • Rohan
1 vote
4 replies
6.3K views
Forum: A beginner's guide and In-depth exploration of AlphaFold
alphafold colabfold
updated by Mensur Dlakic Mensur Dlakic • written by shravansaranyan • shravansaranyan
0 votes
0 replies
671 views
Is the significance of p-value between different ROC curves of machine learning models important?
roc pvalue learning python machine
written by egascon • egascon
0 votes
2 replies
1.1K views
Custom Database Kraken2 with Metagenomes
database kraken2
written by alenew.am • alenew.am
0 votes
0 replies
538 views
NIPT data downstream interpretation
nipt
written by 1769mkc 1769mkc
0 votes
3 replies
1.3K views
Per base sequence content variation after doing fastqc
rna-seq fastqc
updated by GenoMax GenoMax • written by Luna • Luna
0 votes
4 replies
2.4K views
Biopython installation error
biopython
updated by Wayne Wayne • written by Oliver • Oliver
0 votes
0 replies
459 views
Using ANNOVAR to identify variants falling within ALU elements
annovar
written by Aiswarya • Aiswarya
0 votes
0 replies
617 views
Alluvial Plot of TCR Sequencing Data
tcrseq alluvial-plot
updated by Ram Ram • written by ab39 • ab39
0 votes
4 replies
2.4K views
single-cell data: Batch effects still there after integration
single-cell integration batch-effect
written by Penny • Penny
0 votes
1 reply
551 views
Methods for correlating clinical measures with gene expression?
rna-seq correlation
updated by ATpoint ATpoint • written by Haad • Haad
0 votes
5 replies
1.6K views
How to Obtain Gene-Transcript Isoforms from RefSeq Format using a gff files as input?
gff isoforms refseq
written by mauricio.1313 • mauricio.1313
0 votes
6 replies
1.6K views
nanopore sequencing - fastp dedup option
fastp nanopore
updated by colindaven colindaven • written by HarperReed • HarperReed
0 votes
0 replies
568 views
News: Cancer Genomics course - online 10-14 March
r cancer-genomics tumor-evolution
written by Physalia-courses Physalia-courses
2 votes
5 replies
5.5K views
BD Rhapsody software - single cell seq
bd rhapsody single-cell
updated by ATpoint ATpoint • written by colindaven colindaven
3 votes
6 replies
4.7K views
Detecting Structural variants in sequencing data
structural variants sequencing calling svs
updated by xingyu • xingyu • written by Glen • Glen
0 votes
0 replies
703 views
Calculate allelic richness from vcf/plink data.
r hierfstat genepop ares
updated by Ram Ram • written by K • K
0 votes
0 replies
519 views
filter_vep not filtering variants based on EAS_AF and gnomADe_EAS_AF as expected
wes vcf vep variants filter_vep
updated by Ram Ram • written by Ras • Ras
0 votes
5 replies
1.3K views
single cell clusters
single-cell-sequence scrna
updated by andrew.j.skelton73 andrew.j.skelton73 • written by fuhaolll2 • fuhaolll2
0 votes
0 replies
768 views
News: online course - Assembly and Annotation of Genomes
genome-assembly genome-annotation galaxy
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
7 replies
5.7K views
error in pipeline installation dependent on numpy version 1.18.5
numpy cnn python imaging
updated by lieven.sterck lieven.sterck • written by Omics data mining Omics data mining
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5 replies
3.2K views
Extracting and visualizing of specific genomic reference structures
visualization odgi pangenome visualisation vg
updated by colindaven colindaven • written by s_135 • s_135
0 votes
0 replies
498 views
Variant Calling Issue
sv snv
updated by GenoMax GenoMax • written by Nai • Nai
0 votes
1 reply
895 views
Trimming smRNA seq adaptors
trimming smallrna smaterkit
updated by GenoMax GenoMax • written by Matar • Matar
0 votes
7 replies
3.2K views
I encountered a problem while installing packager 'ChIPseeker'
chipseeker curl biocmanager
updated by Ram Ram • written by Pallondyle • Pallondyle
0 votes
5 replies
2.8K views
background genes for gene ontology analysis
gsea deseq2 fgsea
updated by ATpoint ATpoint • written by adi.gershon1 • adi.gershon1
0 votes
1 reply
1.2K views
Biomart doesn't output ALL uniprot IDs
biomart uniprot
updated by i.sudbery i.sudbery • written by sgupt46 • sgupt46
0 votes
0 replies
713 views
ChromHMM - annotation of chromatin states
chromhmm
written by Bioinformatics_16 • Bioinformatics_16
0 votes
2 replies
2.4K views
Nextflow: how to filter a channel by a list? (DLS2)
dsl2 nextflow
updated by nyoungb2 • nyoungb2 • written by lacb • lacb
0 votes
5 replies
1.8K views
How to filter INFO field of VCF by 'OR' using bcftools
filtering bcftools vcf
updated by Pierre Lindenbaum Pierre Lindenbaum • written by adixon3 • adixon3
0 votes
0 replies
608 views
Does the order of HTOs matter?
hashsolo scanpy
written by bioinfo • bioinfo
0 votes
3 replies
1.8K views
Sample-level demultiplex raw FASTQ file
drop-seq demultiplex rna-seq single-cell
updated by dsull dsull • written by Bhavya • Bhavya
0 votes
0 replies
619 views
Will Plink and GCTA match and reorder sample order?
plink gcta
updated by Ram Ram • written by Mian • Mian
0 votes
0 replies
892 views
News: Only 2 Seats Left: Landscape Genomics Workshop in Poland (20–24 January 2025)
snps local-adaptation gis landscape-genomics
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
0 replies
865 views
R Circlize Genomics
snp barplot histogram count
updated by GenoMax GenoMax • written by chimerajit • chimerajit
0 votes
6 replies
2.3K views
Genome Contamination Analysis
contamination genome assembly analysis
updated by lieven.sterck lieven.sterck • written by SomeOne • SomeOne
0 votes
0 replies
642 views
XWAS quality control
xwas quality-control
updated by Ram Ram • written by renjunling2020 • renjunling2020
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