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0 votes
2 replies
1.1K views
Annotating Multiple Sentences with Gene Entities Using PubTator
pubtator annotation text ner
written by dolphin-sea • dolphin-sea
1 vote
3 replies
1.6K views
How to determine n and c terminal nucleotide bases from fasta sequences via R or bash scripting?
terminal fasta n c
updated by Mensur Dlakic Mensur Dlakic • written by prithvi.mastermind • prithvi.mastermind
0 votes
0 replies
1.4K views
GEMMA GWAS Analysis: Covariate Formatting and Encoding Best Practices
gwas gemma formatting covariate
written by Patrick • Patrick
1 vote
6 replies
2.1K views
Add sequential number to a specific row
r
updated by zx8754 zx8754 • written by f.m.1994 • f.m.1994
0 votes
1 reply
1.1K views
java.lang.UnsupportedClassVersionError
java picard gatk
updated by Ram Ram • written by ali.kian.saei • ali.kian.saei
0 votes
2 replies
2.2K views
Converting VCF to BEAGLE format
bcftools variant snp beagle vcf
written by diversitree • diversitree
0 votes
2 replies
1.4K views
Subtypes from bulk RNA-seq to scRNA-seq
nmf scrna-seq tcga
written by tujuchuanli tujuchuanli
1 vote
5 replies
1.6K views
MHV_A59 featureCounts
featurecounts rnaseq mhva59
updated by GenoMax GenoMax • written by rajdeepboral00 • rajdeepboral00
0 votes
2 replies
1.9K views
PanSN naming issue in pggb fastas
pansn pggb
updated by colindaven colindaven • written by Whirlingdaf • Whirlingdaf
0 votes
5 replies
3.3K views
cellranger error fix GTF
gtf cellranger scrna-seq
written by marco.barr • marco.barr
0 votes
0 replies
611 views
Radar plot from IREA (Immune response enrichment analysis)
irea
written by Biostars2200 • Biostars2200
0 votes
2 replies
1.4K views
"Unable to establish SSL connection" error for downloadin in wsl ubuntu by wget
ubuntu wget ssl hisat2 linux
written by ali.kian.saei • ali.kian.saei
0 votes
1 reply
1.0K views
making a circos for snps indels and SV
circos
updated by Bastien Hervé Bastien Hervé • written by Bushra Bibi Bushra Bibi
0 votes
3 replies
2.9K views
Compute P-Values for SNP Fst from Pairwise Fst Calculations (--weir-fst-pop)
snp analysis calculation pairwise vcftools fst p-value calculations
updated by Jorge Amigo Jorge Amigo • written by Armin • Armin
0 votes
4 replies
2.0K views
chip seq data visualization
macs2 bamcompare bdgcomp deeptools chip-seq
written by nswati106 • nswati106
0 votes
0 replies
817 views
ssGSEA & WGCNA workflow approach
ssgsea wgcna
written by TNF_alpha • TNF_alpha
0 votes
4 replies
2.5K views
Create the correct contrast in limma when want to combine 2 or more groups
contrast limma dea
updated by Gordon Smyth Gordon Smyth • written by Lila M Lila M
1 vote
5 replies
1.9K views
cant import VCF into OneMap, read.vcfR works but onemap_read_vcfR doesn't
r onemap vcf vcfr
written by dimeresia • dimeresia
0 votes
7 replies
2.4K views
cellxgene DNA Methylation data
cellxgene
updated by LChart LChart • written by 1769mkc 1769mkc
0 votes
7 replies
2.8K views
How to check for adapters?
adapters trimmomatic ngs
updated by Darked89 Darked89 • written by Luna • Luna
0 votes
2 replies
975 views
TCGA miRNA data query
tcga mirna
written by jain72744 • jain72744
0 votes
0 replies
625 views
TCGA -LIHC Isoform Expression Data
isoform tcga
written by jain72744 • jain72744
0 votes
1 reply
1.6K views
is there any possible way I can tell whether the presence of more bands in the elutions are because of insufficient washing or truncated/degraded protein still having the his tag?
protein purification offtopic
updated by GenoMax GenoMax • written by mohammed • mohammed
0 votes
1 reply
799 views
MFE in RNA structure
rna
updated by Mensur Dlakic Mensur Dlakic • written by Ebtihal • Ebtihal
0 votes
1 reply
1.3K views
nf-core/sarek pipeline : adding genome index in config file
nf-core config memory variantcalling sarek
updated by Maxime Garcia Maxime Garcia • written by ashaneev07 • ashaneev07
0 votes
1 reply
1.2K views
N content - Sequence Quality
fastp fastq preprocessing wgs
updated by GenoMax GenoMax • written by j.k3096 • j.k3096
0 votes
1 reply
1.1K views
Seeking Explanation for the "Secondbest" Method in Gene log2FC Calculations with CRISPR Data in MAGeCK
crispr log2fc analysis mageck gene
updated by ATpoint ATpoint • written by yanbinwan • yanbinwan
0 votes
1 reply
1.2K views
What is the proper output for a psiclass_vote.gtf file, and how does one add gene names and strand to gtf files?
psiclass rna-seq
written by DdogBoss • DdogBoss
0 votes
4 replies
1.8K views
Commands for processing mixed 4-sample scRNA-seq data with cellranger
cellranger scrna-seq chromium
written by Apprentice Apprentice
0 votes
0 replies
1.5K views
Forum: Survey: Exploring RNA Data Quality in Genomics
quality interpretation sequencing survey rna
written by chrisk • chrisk
1 vote
14 replies
10K views
Forum: New Macbook M4 laptops (Pro vs Max)
pro max mac rna-seq m4
updated by GenoMax GenoMax • written by tommygoe • tommygoe
0 votes
2 replies
1.2K views
miRBase is down
mirbase
written by tyron.chang • tyron.chang
0 votes
0 replies
956 views
miRNA-seq Analysis: Is a low percentage of assigned reads normal when using a miRBase gff file for counting
mirna counting rnaseq
written by Sib • Sib
0 votes
1 reply
1.6K views
Sample-wise raw count matrix from 10x multiplexed data
cellranger soupx singlecellrnaseq 10x
updated by kkohl • kkohl • written by AB AB
0 votes
1 reply
964 views
How to Test Statistical Association Between Clusters and Conditions in scRNA-seq Data?
scrna-seq
updated by jared.andrews07 jared.andrews07 • written by fifty_fifty • fifty_fifty
0 votes
1 reply
931 views
GATK is throwing an error when using dbsnp hg19 or GCRCh 38 build 156
build156.25 dbsnp dnsp156.40
updated by Ram Ram • written by Karibu • Karibu
0 votes
3 replies
2.9K views
Cattle reference genome ARS-UCD2.0
cow genome assembly
updated by Michael Dondrup Michael Dondrup • written by am29 • am29
0 votes
1 reply
910 views
RNA-seq WGCNA anlysis
rna-seq wgcna
updated by ATpoint ATpoint • written by SeoG • SeoG
0 votes
0 replies
598 views
Splitting single cell data
scrna
written by otieno43 • otieno43
0 votes
0 replies
925 views
News: Online course - Flow cytometry data analysis with R/Bioconductor
r bioconductor flow-cytometry cancer-genomics
written by Physalia-courses Physalia-courses
0 votes
0 replies
941 views
Help selecting WGCNA soft thresholding power
power wgcna soft
updated by andres.firrincieli andres.firrincieli • written by TNF_alpha • TNF_alpha
0 votes
0 replies
1.0K views
Deciding Between TOIL Processed Data (Xena) vs. TCGA Biolinks Data for DE Analysis
deseq tcga xena rna-seq biolinks
written by lyan125 • lyan125
0 votes
1 reply
1.1K views
working with shapeit.
shapeit
updated by sentigeo • sentigeo • written by sanchit000singhdr098 • sanchit000singhdr098
0 votes
1 reply
1.1K views
rRNA contamination in RNASeq fdata
contamination rrna rnaseq
updated by dsull dsull • written by rajdeepboral00 • rajdeepboral00
0 votes
2 replies
1.1K views
inserting Normalized count data
deseq2
updated by ATpoint ATpoint • written by Saeed • Saeed
1 vote
5 replies
2.2K views
high IgG background
background igg signal cuttag
updated by ATpoint ATpoint • written by 17318598206 • 17318598206
0 votes
2 replies
1.4K views
Unexpected results: Conservation of cCREs
ccres genes encode conservation
written by Yacob • Yacob
0 votes
3 replies
2.6K views
FastQC polyA and polyG trimming in RNA-seq
polya qc trimming rna-seq fastq
written by joonhong kwon • joonhong kwon
0 votes
4 replies
1.9K views
Finding Orthologs in Unannotated Genomes
orthologs
written by triplee0305 • triplee0305
0 votes
4 replies
1.7K views
Differential Expression for a predefined one or multiple genes and multiple testing
deseq2 multiple-testing differential-expression
updated by Gordon Smyth Gordon Smyth • written by p-radwan.derbala • p-radwan.derbala
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