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0 votes
0 replies
642 views
CoCoRV - Which file from gnomAD as control
variants rare wes
written by andrebolerbarros 0
0 votes
1 reply
1.1K views
SNP/kb in chromosome wise
variant snp calling
updated by Pierre Lindenbaum 17K • | written by adarsh 8
0 votes
0 replies
440 views
time to event GWAS
signals independent
updated by GenoMax 16K • | written by JJ 0
0 votes
9 replies
2.3K views
single-cell zeros handling, inputation and filtration
zeros single-cell
updated by jared.andrews07 1.9K • | written by frarodmar17 4
0 votes
3 replies
1.8K views
submitting to SRA database
files pod5 sra
updated by ATpoint 9.1K • | written by baibhu1234 6
0 votes
3 replies
1.3K views
Flattened TSS enrichment x unique fragments from scATAC experiment
atac
updated by jared.andrews07 1.9K • | written by forestyang 0
0 votes
6 replies
2.1K views
determine softmask regions from FASTA
bed fasta softmask
updated by lieven.sterck 1.6K • | written by Matteo Ungaro 16
0 votes
4 replies
1.7K views
Number of reads supporting a structural variant value in Dragen structural variant calling output
structural vcf variants manta
updated by benformatics 426 • | written by ieie 2
0 votes
2 replies
1.4K views
Strategy for mapping rat and human gene symbols from scRNA-seq data - dealing with inconsistent nomenclature
orthologs scrnaseq
updated by ATpoint 9.1K • | written by dxj294 0
0 votes
0 replies
805 views
News: online course: R/Bioconductor for Mass Spectrometry and Proteomics
bioconductor r spectrometry mass proteomics
written by Physalia-courses 281
0 votes
5 replies
1.6K views
What is the interpretation of sequence enrichment in whole genome sequencing?
sequencing wgs enrichment
updated by GenoMax 16K • | written by marongiu.luigi 79
0 votes
9 replies
3.0K views
Metabat2 (binning package) Error: ReferenceFile: <filename>.fasta is not the same as in the bam headers! (targets: 10575 from the bam vs 67331 from the ref)
binning metagenomics metabat2
written by samdegregori 0
0 votes
0 replies
489 views
Combining expression and mutation data from TCGA
tcga
updated by Bastien Hervé 680 • | written by Maliha 0
0 votes
1 reply
1.3K views
Annotate .fcs files with gated population classification
facs flow cytometry flowjo
updated by Dylan 0 • | written by Benni 3
0 votes
0 replies
539 views
Converting map & ped files to binary file. Missing info
map ped plink
updated by Ram 4.5K • | written by mulderharko 0
0 votes
2 replies
2.3K views
Error in .Call2("C_solve_user_SEW", refwidths, start, end, width, translate.negative.coord
maftools
updated by garcesj 5 • | written by alwayshope 4
0 votes
3 replies
1.1K views
Is there a way or a tool to compare two hmm DNA profiles?
biotool hmmprofile hmm-hmm
written by abarcajose97 0
1 vote
2 replies
1.5K views
LASSO regression for gene selection and clinical variables
lasso feature classification selection edger
updated by Mensur Dlakic 3.0K • | written by fabian 1
0 votes
4 replies
1.6K views
How to Check the Quality of a .fasta File for Sequence Alignment?
sequence-alignment fasta quality-control
updated by colindaven 844 • | written by Dikshya 0
0 votes
3 replies
1.1K views
Kmerfinder database with bacteria, archea, and eukaryotic data
kmer
updated by lieven.sterck 1.6K • | written by Mark 6
0 votes
5 replies
1.4K views
rna-seq reads not passing fastqc
rna-seq fastqc
written by Luna 0
0 votes
6 replies
1.8K views
Is there a proper way to choose bins in barplot
visualization plot bar
written by QX 9
1 vote
1 reply
935 views
Seeking advice for a machine learning project with RNA-seq data
ml gene_expression machine_learning dge deep_learning
updated by dthorbur 350 • | written by ymd56731 1
0 votes
0 replies
775 views
Search and return transcript types from gene symbols by querying mygene.info or ensembl rest APIs
gene ensembl mygene transcriptomics identification
written by m.musgrove 0
0 votes
0 replies
831 views
Questions about genome annotation of non-coding RNA with infernal
ncrna annotation
written by Abieskawa 2
0 votes
1 reply
891 views
samtools tview special character
samtools bam rna
updated by Pierre Lindenbaum 17K • | written by from the mountains 25
0 votes
3 replies
1.5K views
snpEff 'java.lang.OutOfMemoryError: Java heap space' problem despite increasing initial and maximum heap size to 10g and 20g respectively
heapsize conda snpeff anaconda java
updated by Alex 0 • | written by millielam 0
0 votes
6 replies
1.5K views
Convert miRNA_ID to GENE-symbol
gene_symbol
updated by i.sudbery 2.3K • | written by sorour.hasani 0
1 vote
0 replies
1.3K views
Job: A 2 year postdoc position: The Genetics of the Silk Road
postdoc ancientdna paleogenetics silkroad ai
written by eranelhaik 3
0 votes
1 reply
709 views
scRNA-seq analysis after overexpressing a specific gene
overexpression scrna-seq
updated by rfran010 174 • | written by Song 1
0 votes
3 replies
925 views
SCRNA calculate the average expression
scrna cell-single-sequence
updated by rfran010 174 • | written by fuhaolll2 3
0 votes
1 reply
870 views
Degree of Freedom Settings in edgeR limma
degree freedom voom analysis differential of edger limma
updated by ATpoint 9.1K • | written by Wu-Sheng Zhang 1
0 votes
0 replies
784 views
Convert genepop to bayescan format
rad-seq bayescan genepop pgdspider stacks
updated by GenoMax 16K • | written by eaabbott0 0
0 votes
3 replies
1.0K views
missing data in taxonomy
taxonomy ncbi
written by noodle 65
0 votes
3 replies
2.1K views
NA12878, NA12891 and NA12892 gold standard samples information
standard gold variant bam calling
updated by GenoMax 16K • | written by heureuse 1
0 votes
0 replies
538 views
AA/AB/BB Genotype information to Numeric
genotype illumina snp
written by Emilie 1
0 votes
2 replies
1.2K views
Merge paired end reads after mapping in BAM files
bam paired-end merge
updated by rfran010 174 • | written by muhammad_elhossary 0
0 votes
0 replies
775 views
How to perform cross-species integration?
integration seurat single-cell scrna-seq
written by Shankar112 0
1 vote
9 replies
2.8K views
Unexpected spliced/unspliced percentages in scRNA-seq data
seq spliced unspliced analysis velocity data scrna
updated by predeus 212 • | written by MS 3
0 votes
2 replies
1.0K views
Spliced and unspliced counts from HIVE scRNA-seq data
hive velocyto scvelo scrna-seq
written by anna_o 0
0 votes
1 reply
977 views
Whole genome resequencing sample size for population genetics?
whole_genome_resequencing population_genetics
updated by dthorbur 350 • | written by Dylan 0
0 votes
1 reply
1.6K views
Job: Post-doctoral Research Fellow Level 1
biomedical researcher post-doc biomolecular
written by jagoda.wychowaniak 0
0 votes
14 replies
3.2K views
Proteomics data analysis
data-analysis biostatistics statistics proteomics
written by Ariadna 2
0 votes
0 replies
865 views
News: Online course: Gene set enrichment analysis in R/Bioconductor
r bioconductor gsea genesetenrichmentanalysis
written by Physalia-courses 281
0 votes
3 replies
1.3K views
How to connect the tips of several phylogenetic trees with ggtree?
r tanglegram phylogenetic tree ggtree
written by Luca Arbore 1
0 votes
5 replies
1.8K views
Extracting CDS Region of FFAR4 Gene Using Samtools from GRCh38 Reference Genome
samtools ccds grch38 genome cds
updated by jkbonfield 133 • | written by Rohan 4
0 votes
2 replies
1.8K views
How to extract and analyze variant sequences from gnomAD v4 exome VCF
samtools bcftools exome vcf genomics
written by Rohan 4
0 votes
3 replies
1.6K views
How to plot PCA for DEGs
deg for pca_plot
updated by san96 19 • | written by otieno43 4
0 votes
6 replies
1.8K views
Why only C > A,T,G and T > A,G,C mutations typically considered in 96 SBS context plots
mutations snv
written by BioStar22 0
1 vote
2 replies
1.2K views
help with finding start&and locations of gene list
gene locations
updated by GenoMax 16K • | written by Naor 1
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