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2 votes
0 replies
26K views
Herald: The Biostar Herald for Monday, December 23, 2024
herald
written by Biostar Biostar
0 votes
6 replies
3.0K views
dbSNP and indels
vcf
updated by biology.may20 • biology.may20 • written by wonde2000 • wonde2000
0 votes
1 reply
1.2K views
Retrieve query start and end positions on reverse strand with Pysam
python alignment pysam
updated by Mark Mark • written by María José • María José
1 vote
0 replies
1.8K views
Job: Looking for Internship/Junior Bioinformatics Opportunity
opportunities bioinformatics
written by Felix • Felix
0 votes
0 replies
779 views
Seeking Tool for Transcription Factor Motif Enrichment Analysis on RRBS Dataset
rrbs epigenetics transcription-factors dna-methylation motif-enrichment
updated by Ram Ram • written by Srinka • Srinka
0 votes
2 replies
1.4K views
can we perform separate channel analysis of two-channel Agilent microarray data?
two-channel microarray
written by Bini • Bini
0 votes
0 replies
754 views
Finding Similar Subsequences From Protein Sequences
pfam hmmer protein blast
written by jet • jet
0 votes
2 replies
1.5K views
Can different genes encode the same proteins?
uniprot genes proteins enzymes
updated by michael.ante michael.ante • written by songyeon0425 • songyeon0425
0 votes
3 replies
1.6K views
Stingtie error: the input alignment file is not sorted
.sam .bam .gtf stringtie
updated by Pierre Lindenbaum Pierre Lindenbaum • written by todd.ugine • todd.ugine
0 votes
2 replies
1.3K views
edgeR customized normalization for differential analysis
voom cpm normalization edger dge
updated by 1769mkc 1769mkc • written by Wu-Sheng Zhang • Wu-Sheng Zhang
0 votes
3 replies
1.5K views
scRNA - Illumina naming convention unclear
scrna
updated by GenoMax GenoMax • written by kristina • kristina
0 votes
1 reply
838 views
Help finding error in fasta file
fasta
updated by Ram Ram • written by nreynolds • nreynolds
0 votes
8 replies
2.8K views
How to get Normal Samples from TCGA?
normal tcga
updated by Zhenyu Zhang Zhenyu Zhang • written by Jaber • Jaber
0 votes
3 replies
1.9K views
Challenges Using KING for Relatedness Analysis with Non-Standard Genomes (8000 Chromosomes)
vcf relatedness
written by alex • alex
0 votes
0 replies
596 views
Assessment of upstream/downstream variants
downstream_variant variant_annotation upstream_variant
written by Nesma • Nesma
0 votes
1 reply
1.1K views
STARsolo sorted bam contains 'non-whitelisted' barcodes
starsolo alignment
updated by dsull dsull • written by mk mk
1 vote
0 replies
1.2K views
News: I created an NGS data analysis tutorial site (ngs101.com)!
ngs tutorial rna-seq
updated by GenoMax GenoMax • written by ngs101.com ngs101.com
2 votes
5 replies
1.8K views
Wrong SNP calling in my bcftools output
snp bcftools vcf vcftools
written by pablo pablo
0 votes
0 replies
1.1K views
How to Convert Ensembl Gene and Transcript IDs to RefSeq mRNA and Gene IDs from isoforms data?
r biomart refseq ensembl
written by mauricio.1313 • mauricio.1313
0 votes
1 reply
1.3K views
How to annotate all SNPs from a BAM file, not just the variants?
annotation snp bam variant-calling
updated by Mark Mark • written by Andresa Capodifoglio • Andresa Capodifoglio
0 votes
4 replies
1.7K views
Manually modified gtf cannot be loaded into featureCounts STAR
gtf subread featurecounts star
updated by GenoMax GenoMax • written by francesco.limone • francesco.limone
0 votes
3 replies
1.8K views
Computational way to distinguish between polyA and total RNA bulk RNA-seq
rna-seq
written by predeus predeus
0 votes
2 replies
1.9K views
How to use artemis comparison tool?
artemis act comparison genomics
updated by GenoMax GenoMax • written by marongiu.luigi marongiu.luigi
1 vote
0 replies
844 views
News: Cellosaurus release 51
cellosaurus knowledgebase biocuration cell-line
updated by Ram Ram • written by Amos Bairoch • Amos Bairoch
0 votes
3 replies
2.3K views
News: Last Day: Special Deal - 15% Off - RNA-Seq Data Analysis Workshop (March 24 - 27, 2025 in Halle, Germany)
transcriptomics splicing differential-expression rna-seq
written by ecSeq Bioinformatics • ecSeq Bioinformatics
0 votes
5 replies
2.7K views
Non Variant Sites in GVCF File
gatk vcf snp
updated by Jeremy Leipzig Jeremy Leipzig • written by saamhasan55 • saamhasan55
0 votes
8 replies
2.2K views
How to make .fasta file
fasta utrdb
updated by Ram Ram • written by otieno43 • otieno43
0 votes
0 replies
587 views
The VCF generated by the pan-genome contains missing values due to conflicts
vg mc
written by chiyong4783 • chiyong4783
1 vote
3 replies
1.7K views
Understanding BWA parameters
bwa
updated by Mark Mark • written by nicole.leahy • nicole.leahy
0 votes
1 reply
1.1K views
Bonferroni correction for burden by transcripts
association-test statistics
updated by Gordon Smyth Gordon Smyth • written by raphael.B • raphael.B
0 votes
3 replies
2.0K views
featureCounts problems with GTF generated by myself
featurecounts gtf
updated by GenoMax GenoMax • written by soda • soda
0 votes
2 replies
1.0K views
Prokka Error
prokka
updated by Mensur Dlakic Mensur Dlakic • written by Maayeesha • Maayeesha
0 votes
0 replies
694 views
CLIPdb bulk download all RBP binding sites with annotations.
bindingdata rbp bulkdownload clipdb
written by ttcheau • ttcheau
0 votes
0 replies
740 views
Maftools and MutationalPatterns tools
maftools mutationalpatterns
updated by Ram Ram • written by shakyaram079 • shakyaram079
0 votes
2 replies
1.4K views
Interpret IGV
flags igv read
written by najim3 • najim3
0 votes
5 replies
1.7K views
Confusion about different IDs
refseq
written by zizigolu zizigolu
0 votes
2 replies
1.6K views
Which pangenome graph (full/clip/filter/sampled) to use when align RNA-seq with mpmap
vg
written by Hanc • Hanc
0 votes
0 replies
667 views
News: Join us in Poland for the Landscape Genomics course in January 2025!
adaptationgenomics sambada r gis landscapegenomics
updated by ATpoint ATpoint • written by Physalia-courses Physalia-courses
0 votes
4 replies
3.7K views
cellranger count for multiple samples
cellranger single-cell-transcriptomics 10x
written by Assa Yeroslaviz Assa Yeroslaviz
0 votes
3 replies
1.2K views
problem with 16S reverse reads with low quality
soil amplicon micorbiome sequencing trimmomatic
updated by hakimbazol • hakimbazol • written by michele.lamprillo • michele.lamprillo
0 votes
0 replies
637 views
Process localizer (1) terminated with an error exit status (1) predector error
predector fungus
written by Bushra Bibi Bushra Bibi
0 votes
3 replies
1.5K views
BAM to Bedgraph creating an empty file
bisulfite-seq bismark
updated by hpf0210 • hpf0210 • written by irebekah.c • irebekah.c
1 vote
2 replies
1.6K views
Discripancy in miRDeep2.pl and quantifier.pl outputs
mirdeep2
written by otieno43 • otieno43
0 votes
0 replies
800 views
Error encountered in clusterSVs function from the script located at MC-paper doc/mc-paper/fly/cluster-svs.R
mc sveval
written by chiyong4783 • chiyong4783
1 vote
7 replies
2.9K views
Extracting nucleotide gene sequence as a single fasta from whole genome data with blastn
blast cds alignment whole-genome
updated by Michael Dondrup Michael Dondrup • written by Kristen • Kristen
2 votes
0 replies
1.9K views
Tutorial: Fix the "incompatible matrix dimensions" issue in running harmony
harmony rna-seq single-cell
updated by Ram Ram • written by Pei Pei
0 votes
0 replies
733 views
Issues with GBS pipeline, samtools and bwa specifically
samtools bwa genotyping linux genomics
written by dimeresia • dimeresia
0 votes
0 replies
698 views
ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
methylation epicarray champ
written by André • André
0 votes
0 replies
544 views
umi tools RNA data [transcriptome alignment or genome alignment]
ont umi_tools
written by Shiyi • Shiyi
0 votes
3 replies
1.7K views
UMI collapsing in single cell
10x umi single-cell collapse
updated by i.sudbery i.sudbery • written by zbidav • zbidav
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