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0 votes
5 replies
2.7K views
Ensemble Service error
ensembl gene
updated by GenoMax 16K • | written by anasjamshed 14
1 vote
0 replies
757 views
Interpretation of WGCNA modules dendrogram
metadata sample wgcna clustering dendrogram
written by tommasoasquini 1
0 votes
0 replies
611 views
News: Introduction to Bayesian statistical modelling for biologists (online course)
bayes biostatistics modelling course
written by Rosina Savisaar 2
0 votes
2 replies
1.6K views
Problems with zero count values and mapping % in MaGeCK
crispr screen mageck
written by DragosV 0
0 votes
1 reply
1.2K views
ENRICHMENT USING CLUSTERPROFILER
clusterprofiler somascan proteins enrichment
updated by ATpoint 9.1K • | written by kl 2
0 votes
4 replies
1.8K views
CNV Analysis and Visualisation
visualization cnv analysis
updated by QX 9 • | written by jia 0
0 votes
0 replies
557 views
Viewing nexus de bruijn graphs
de-bruijn-graphs nexus
written by guntul 4
0 votes
3 replies
1.6K views
VEP Unable to process HGVS variants
python vep genome
updated by Ram 4.5K • | written by Yacob 0
0 votes
2 replies
1.1K views
run snp2hla tool in windows subsytem for linux
snp2hla
updated by Ram 4.5K • | written by anasjamshed 14
2 votes
4 replies
3.9K views
Best Practices for ATACseq for Performing Differential Accessibility Analysis
differential-accessibility csaw deseq2 atacseq
updated by Picasa 71 • | written by newbioinfograd2323 4
1 vote
1 reply
1.2K views
What's the point of integrating single cell data of different conditions?
integration transcriptomics seurat single-cell
updated by jared.andrews07 1.9K • | written by ARP 1
0 votes
2 replies
964 views
mapping reads to consensus - O coverage regions
mapping consensus coverage
written by elina2410 0
0 votes
3 replies
1.7K views
Write maf file (opposite of read.maf)
maf maftools r
written by Nona 9
0 votes
0 replies
968 views
Blog: Novogene Single-cell and Spatial Multi-omics Case Study II: Pan-cancer Research and Application
multi-omics single-cell
written by Novogene 54
0 votes
0 replies
492 views
Can checkM do automatic genus identification?
checkm
written by blur 30
2 votes
0 replies
794 views
News: Pangenomix Ltd : A bioinformatics consulting venture
bioinformatics microbial genomics consulting
written by Nitin 2
0 votes
5 replies
1.7K views
Integrating gene ontology DB's into pipeline scripts
david pipelines go
written by joemrosen 0
0 votes
3 replies
1.7K views
homer installation
homer
updated by GenoMax 16K • | written by leslielebon 0
0 votes
1 reply
622 views
Advaita iPathwayGuide - How many GO modules are possible for each gene?
gene-ontology advaita
updated by Ram 4.5K • | written by pbensing 0
0 votes
2 replies
1.6K views
MAF tools - changing tumor sample barcode name
maf maftools r
updated by zx8754 1.2K • | written by Nona 9
0 votes
13 replies
2.9K views
Mouse genome featureCounts
grcm39 rna-seq featurecounts
written by rajdeepboral00 7
0 votes
5 replies
1.7K views
Convert bcf to vcf and run snp2hla tool in windows subsytem for linux
snp2hla vcf bcf
updated by Istvan Albert 10K • | written by anasjamshed 14
0 votes
0 replies
675 views
Extracting coomon SNPs, medging SNP data from illumina platform and affymetrix (AXIOM SUITE).
bovine axiom chip genotyping
written by Maxmangomo1997 0
0 votes
0 replies
757 views
How to Perform Lineage Analysis Using SNPs Derived from a De Novo Assembly?
plink phylogenetics vfc lineage lineage-analysis
written by alex 0
1 vote
0 replies
1.5K views
Job: Job Opportunity - Remotely Allowed - Italy
data-analysis environmental-science r sql python
updated by colindaven 844 • | written by Federico 1
0 votes
1 reply
1.0K views
How to get all chromosomes RefSeq ID from RefSeq assembly ID?
assemblyaccession database entrez refseq ncbi
updated by GenoMax 16K • | written by Maria 0
0 votes
5 replies
2.6K views
Help Analysing Perturb-Seq Data - How do I extract 10X cell barcodes and relevant guides from fastq files?
single-cell perturb-seq 10x
updated by ATpoint 9.1K • | written by jesswhitts 0
0 votes
0 replies
750 views
SNPnexus
snps histone snpnexus non-coding modification
written by saira 0
0 votes
0 replies
1.2K views
News: Online Course - A Practical Introduction to NGS Data Analysis (February 10-12, 2025)
workshop rnaseq illumina dnaseq variantcalling
written by ecSeq Bioinformatics 9
0 votes
10 replies
4.8K views
TOM matrix generated by WGCNA package in R
wgcna
updated by GenoMax 16K • | written by Dude 0
0 votes
1 reply
1.2K views
WIG files - bulk RNA-seq
rnaseq wig normalisation fastq
updated by rfran010 174 • | written by pinkclouds 0
0 votes
2 replies
1.9K views
Recommended reliable enrichment tool
ontology enrichr enrichment
updated by geneontologyhelp 57 • | written by noamizc 0
0 votes
4 replies
2.0K views
Extracting Variant Sequences from 1000 Genomes VCF File and Mapping to Canonical Gene Sequence
bcftools genome vcf wgs
updated by cmdcolin 448 • | written by Rohan 4
2 votes
5 replies
4.0K views
Comparing SV calls produced by VG call on a Minigraph-Cactus produced Pangenome Graph vs. a linear reference
minigraph-cactus variant-calling structural-variant vg
updated by GenoMax 16K • | written by peterdfields 4
0 votes
7 replies
2.7K views
Forum: Premade RNA-seq pipeline or custom
rna-seq pipeline
updated by i.sudbery 2.3K • | written by noodlejackson 4
0 votes
2 replies
995 views
MT and rRNA gene expression in bulk RNA-seq sample QC filtering
rna-seq
written by noodlejackson 4
0 votes
1 reply
856 views
Pocket comparison of homologuos proteins suitable to inform mutagenesis
prokaryotes structure
updated by dthorbur 350 • | written by Schmoho 1
0 votes
1 reply
666 views
What are your thoughts on automatic segmentation of metastases using Deep Learning Models?
metastases deep-learning
updated by ATpoint 9.1K • | written by clara-28 0
1 vote
0 replies
26K views
Herald: The Biostar Herald for Tuesday, January 07, 2025
herald
written by Biostar 380
0 votes
1 reply
833 views
Bulk-RNA-Seq integrate control samples.
modelmatrix rna-seq
updated by i.sudbery 2.3K • | written by fabian 1
2 votes
3 replies
1.4K views
How to check SRA file download possible corrupted?
sra
updated by Istvan Albert 10K • | written by xqyn 6
3 votes
2 replies
1.4K views
How to Resolve Reference Mismatch While Extracting Gene Variants from 1000 Genomes Project Phase 3 VCF?
samtools bcftools grch38 genome vcf
written by Rohan 4
1 vote
4 replies
6.6K views
Forum: A beginner's guide and In-depth exploration of AlphaFold
alphafold colabfold
updated by Mensur Dlakic 3.0K • | written by shravansaranyan 2
0 votes
0 replies
684 views
Is the significance of p-value between different ROC curves of machine learning models important?
roc pvalue learning python machine
written by egascon 6
0 votes
2 replies
1.1K views
Custom Database Kraken2 with Metagenomes
database kraken2
written by alenew.am 1
0 votes
0 replies
541 views
NIPT data downstream interpretation
nipt
written by 1769mkc 127
0 votes
3 replies
1.3K views
Per base sequence content variation after doing fastqc
rna-seq fastqc
updated by GenoMax 16K • | written by Luna 0
0 votes
4 replies
2.5K views
Biopython installation error
biopython
updated by Wayne 208 • | written by Oliver 0
0 votes
0 replies
461 views
Using ANNOVAR to identify variants falling within ALU elements
annovar
written by Aiswarya 2
0 votes
0 replies
655 views
Alluvial Plot of TCR Sequencing Data
tcrseq alluvial-plot
updated by Ram 4.5K • | written by ab39 0
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