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0 votes
2 replies
1.2K views
How to compare the gene profile of two organisms (what genes are in common) using genBank?
genes genbank genome comparison
written by marongiu.luigi marongiu.luigi
1 vote
2 replies
1.2K views
Does TCGA data only use host reads to make pre-processed data (CNV, Mutations status, RNA-seq)?
rna-seq copy-number-variation mutation-status tcga
updated by Zhenyu Zhang Zhenyu Zhang • written by yahn • yahn
1 vote
2 replies
2.9K views
HOMER works incorrectly with -sspe option for paired-end reads
chip-seq homer
updated by Sudarshana • Sudarshana • written by biostart biostart
0 votes
4 replies
1.6K views
Pseudoreplicate creation from bam files
chipseq idr shuffle_bam
written by sarahmanderni sarahmanderni
1 vote
0 replies
811 views
News: Online course: Genome Assembly and Annotation - 17–21 March
genome-assembly genome-annotation long-reads galaxy
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
0 replies
524 views
Are there any tools that support wobble-base pair alignment?
pair wobble-base
written by Renqing • Renqing
0 votes
1 reply
1.0K views
WarningNAs produced by integer overflow error using SCTransform
scrna seurat
updated by Bastien Hervé Bastien Hervé • written by Rosie • Rosie
0 votes
4 replies
2.5K views
Unable to integrate separately SCTransformed scRNAseq Seurat Objects
seurat
updated by Ram Ram • written by awsk • awsk
1 vote
11 replies
4.4K views
Determine type of Pacbio read
sratoolkit clr pacbio hifi long-reads
updated by GenoMax GenoMax • written by María José • María José
0 votes
1 reply
889 views
Consensus Motif
msa motif
updated by Mensur Dlakic Mensur Dlakic • written by prs • prs
0 votes
12 replies
3.5K views
Snakemake-Created Conda Environment Deactivation
linux workflow conda snakemake
updated by Marc • Marc • written by menyawino • menyawino
0 votes
2 replies
1.8K views
Bimodal %GC plot of fastqc output in RNASeq
rice rna-seq illumina fastqc gc
updated by Ram Ram • written by devbt15 • devbt15
1 vote
1 reply
931 views
how to calculate gene length for TPM
counts tpm reads
updated by ATpoint ATpoint • written by adi.gershon1 • adi.gershon1
0 votes
2 replies
1.6K views
decoupleR & Transcription Factory Activity Inference: pvalue or padj?
pvalue padj decoupler
updated by Picasa Picasa • written by OST • OST
0 votes
0 replies
699 views
News: online course: Generalised Linear Models in R
r generalisedlinearmodels glms
written by Physalia-courses Physalia-courses
96 votes
110 replies
72K views
Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
1000genomes plink pca
updated by Niharika • Niharika • written by Kevin Blighe Kevin Blighe
0 votes
2 replies
1.9K views
DMRcate ranges liftover hg19 to hg38
dmrcate liftover dmr methylation annotation
updated by t.peters • t.peters • written by sativus • sativus
0 votes
0 replies
1.6K views
Job: 2-year Postdoc Fellowship in Bioinformatics of Paleogenomics and AI - Deadline February 1st 2024. Sweden
postdoc ancientdna paleogenetics ai silkroad
updated by colindaven colindaven • written by eranelhaik • eranelhaik
0 votes
3 replies
1.9K views
Forum: What is meant by referring to research studies as "stories"?
articles science story genomics
updated by ATpoint ATpoint • written by mcsimenc • mcsimenc
0 votes
7 replies
2.5K views
10X Genomics Cellranger Transcriptome Alignment for Homo Sapiens and Epstein-Barr virus (EBV) Simuetaneously
ebv cellranger scrna-seq 10x
updated by GenoMax GenoMax • written by Wu-Sheng Zhang • Wu-Sheng Zhang
0 votes
8 replies
2.2K views
How modified GTF file into a BED file with chromosome aware format?
gtf refseq bed
updated by Juke34 Juke34 • written by mauricio.1313 • mauricio.1313
0 votes
4 replies
1.7K views
No gene name
ensembl biomart gene_name deseq2
updated by Dave Carlson Dave Carlson • written by rajdeepboral00 • rajdeepboral00
0 votes
6 replies
1.7K views
Could someone send me CISA software ?
cisa
written by lu_baicheng • lu_baicheng
0 votes
2 replies
1.1K views
Circos
visualisation circos
updated by microfuge microfuge • written by Ahashan • Ahashan
0 votes
2 replies
1.2K views
RPKM value interpretation
rpkm gene-expression
updated by rfran010 • rfran010 • written by ymd56731 • ymd56731
0 votes
2 replies
1.4K views
Correcting ONT reads - Alternative to vechat?
ont correction
updated by colindaven colindaven • written by Crying_monkey • Crying_monkey
3 votes
0 replies
26K views
Herald: The Biostar Herald for Monday, December 16, 2024
herald
updated by dariober dariober • written by Biostar Biostar
0 votes
7 replies
2.5K views
Blast with variable number of Ns
blast
updated by lieven.sterck lieven.sterck • written by samuel.himes • samuel.himes
0 votes
1 reply
728 views
Clinvar contig
clinvar funcotator
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Phuc Dinh • Phuc Dinh
0 votes
4 replies
1.3K views
Extract aligned positions from reads
samtools target-sequence sequencing genomic-coordinates
written by María José • María José
0 votes
1 reply
1.1K views
Differentiate CLR and Hifi readings in datasets
pacbio long-reads nanopore minimap2
updated by GenoMax GenoMax • written by María José • María José
0 votes
0 replies
578 views
long time on "INFO: Gathering graphs from forest." before getting the run killed.
structural whamg wham variants wgs
written by thomas.heigl.ibk • thomas.heigl.ibk
0 votes
2 replies
1.1K views
Newbie Bioinformatics
beginner career
updated by Ram Ram • written by Genome_Learner • Genome_Learner
0 votes
5 replies
3.0K views
Flye Assembler Nano-Raw vs Nano-HQ options
genome assembly nanopore flye
written by SomeOne • SomeOne
0 votes
1 reply
1.1K views
cell deconvolution tool Kassandra
cell deconvolution rnaseq kassandra tpm
updated by ATpoint ATpoint • written by adR adR
0 votes
0 replies
756 views
News: Course: Multivariate Data Analysis with R and vegan
r vegan statistics multivariate-data-analysis
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
1 reply
1.9K views
Low Salmon mapping rate even after stringent `fastp` (overrepresented GGGG permitted and troublesome Per tile sequence quality & Per base sequence content?)
fastp rnaseq
updated by ATpoint ATpoint • written by Quang • Quang
3 votes
3 replies
5.1K views
News: 2nd Edition of the Biostar Handbook. New online course starts now.
biostar-handbook
updated by anton.kochkov • anton.kochkov • written by Istvan Albert Istvan Albert
0 votes
1 reply
782 views
Clustering Challenges in Gene Expression Analysis Using WGCNA
r
updated by andres.firrincieli andres.firrincieli • written by NDA • NDA
0 votes
2 replies
1.1K views
Holstein cow SNP reference haplotype panel with FORMAT and SAMPLES (genome ARS-UCD1.2)
cow holstein snp reference-panel
written by biology.may20 • biology.may20
1 vote
2 replies
1.2K views
Plant diploid genome, phashed, CLR reads, PECAT
diploid genome phased
written by san96 • san96
1 vote
2 replies
2.3K views
Clarification on StringTie's `--merge` parameters
stringtie stringtie-merge
updated by cpw • cpw • written by DGTool • DGTool
0 votes
1 reply
632 views
Cluster id conversion into gene names
cluster-4432. cluster-4432.3313
updated by Mensur Dlakic Mensur Dlakic • written by Malik • Malik
0 votes
8 replies
3.3K views
Tools for Subsampling Paired-End Reads to 25X Coverage ?
paired-end fastq depth sequencing coverage
updated by Mensur Dlakic Mensur Dlakic • written by Sony Nguyen • Sony Nguyen
1 vote
3 replies
5.6K views
GeneActivity without Fragments file in Seurat for Integrating scRNA-seq and scATAC-seq
atac fragments geneactivity rna seurat
updated by Mr • Mr • written by el24 • el24
0 votes
9 replies
4.9K views
hd WGCNA - Preservation statistics (Zsummary & MedianRank)
hdwgcna wgcna
updated by andres.firrincieli andres.firrincieli • written by AKypR • AKypR
0 votes
0 replies
660 views
No overlapping contigs problem
virus haplotypecaller gatk
updated by GenoMax GenoMax • written by Matheus • Matheus
0 votes
13 replies
3.6K views
undermined fastq and top unknown barcodes
bcl2fastq
updated by GenoMax GenoMax • written by 1769mkc 1769mkc
0 votes
1 reply
1.1K views
Problem while replicating methylation predicting paper, looking for explanation
bioconductor methylation machine-learning r
updated by cmdcolin cmdcolin • written by Junk • Junk
0 votes
0 replies
656 views
ssGSEA cross-species
ssgsea rnaseq tpm gsea
written by georgii.vdovin • georgii.vdovin
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