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0 votes
4 replies
2.5K views
single-cell data: Batch effects still there after integration
single-cell integration batch-effect
written by Penny 0
0 votes
1 reply
554 views
Methods for correlating clinical measures with gene expression?
rna-seq correlation
updated by ATpoint 9.1K • | written by Haad 0
0 votes
5 replies
1.6K views
How to Obtain Gene-Transcript Isoforms from RefSeq Format using a gff files as input?
gff isoforms refseq
written by mauricio.1313 0
0 votes
6 replies
1.6K views
nanopore sequencing - fastp dedup option
fastp nanopore
updated by colindaven 844 • | written by HarperReed 1
0 votes
0 replies
579 views
News: Cancer Genomics course - online 10-14 March
r cancer-genomics tumor-evolution
written by Physalia-courses 281
2 votes
5 replies
5.6K views
BD Rhapsody software - single cell seq
bd rhapsody single-cell
updated by ATpoint 9.1K • | written by colindaven 844
3 votes
6 replies
4.8K views
Detecting Structural variants in sequencing data
structural variants sequencing calling svs
updated by xingyu 1 • | written by Glen 3
0 votes
0 replies
730 views
Calculate allelic richness from vcf/plink data.
r hierfstat genepop ares
updated by Ram 4.5K • | written by K 0
0 votes
0 replies
528 views
filter_vep not filtering variants based on EAS_AF and gnomADe_EAS_AF as expected
wes vcf vep variants filter_vep
updated by Ram 4.5K • | written by Ras 0
0 votes
5 replies
1.3K views
single cell clusters
single-cell-sequence scrna
updated by andrew.j.skelton73 667 • | written by fuhaolll2 3
0 votes
0 replies
787 views
News: online course - Assembly and Annotation of Genomes
genome-assembly genome-annotation galaxy
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
7 replies
5.7K views
error in pipeline installation dependent on numpy version 1.18.5
numpy cnn python imaging
updated by lieven.sterck 1.6K • | written by Omics data mining 26
0 votes
5 replies
3.2K views
Extracting and visualizing of specific genomic reference structures
visualization odgi pangenome visualisation vg
updated by colindaven 844 • | written by s_135 1
0 votes
0 replies
524 views
Variant Calling Issue
sv snv
updated by GenoMax 16K • | written by Nai 5
0 votes
1 reply
924 views
Trimming smRNA seq adaptors
trimming smallrna smaterkit
updated by GenoMax 16K • | written by Matar 0
0 votes
7 replies
3.3K views
I encountered a problem while installing packager 'ChIPseeker'
chipseeker curl biocmanager
updated by Ram 4.5K • | written by Pallondyle 0
0 votes
5 replies
2.9K views
background genes for gene ontology analysis
gsea deseq2 fgsea
updated by ATpoint 9.1K • | written by adi.gershon1 1
0 votes
1 reply
1.2K views
Biomart doesn't output ALL uniprot IDs
biomart uniprot
updated by i.sudbery 2.3K • | written by sgupt46 0
0 votes
0 replies
742 views
ChromHMM - annotation of chromatin states
chromhmm
written by Bioinformatics_16 0
0 votes
2 replies
2.5K views
Nextflow: how to filter a channel by a list? (DLS2)
dsl2 nextflow
updated by nyoungb2 1 • | written by lacb 12
0 votes
5 replies
1.8K views
How to filter INFO field of VCF by 'OR' using bcftools
filtering bcftools vcf
updated by Pierre Lindenbaum 17K • | written by adixon3 0
0 votes
0 replies
618 views
Does the order of HTOs matter?
hashsolo scanpy
written by bioinfo 19
0 votes
3 replies
1.8K views
Sample-level demultiplex raw FASTQ file
drop-seq demultiplex rna-seq single-cell
updated by dsull 781 • | written by Bhavya 0
0 votes
0 replies
628 views
Will Plink and GCTA match and reorder sample order?
plink gcta
updated by Ram 4.5K • | written by Mian 0
0 votes
0 replies
900 views
News: Only 2 Seats Left: Landscape Genomics Workshop in Poland (20–24 January 2025)
snps local-adaptation gis landscape-genomics
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
0 replies
873 views
R Circlize Genomics
snp barplot histogram count
updated by GenoMax 16K • | written by chimerajit 0
0 votes
6 replies
2.3K views
Genome Contamination Analysis
contamination genome assembly analysis
updated by lieven.sterck 1.6K • | written by SomeOne 33
0 votes
0 replies
648 views
XWAS quality control
xwas quality-control
updated by Ram 4.5K • | written by renjunling2020 0
0 votes
2 replies
1.1K views
Annotating Multiple Sentences with Gene Entities Using PubTator
pubtator annotation text ner
written by dolphin-sea 0
1 vote
3 replies
1.7K views
How to determine n and c terminal nucleotide bases from fasta sequences via R or bash scripting?
terminal fasta n c
updated by Mensur Dlakic 3.0K • | written by prithvi.mastermind 6
0 votes
0 replies
1.4K views
GEMMA GWAS Analysis: Covariate Formatting and Encoding Best Practices
gwas gemma formatting covariate
written by Patrick 0
1 vote
6 replies
2.2K views
Add sequential number to a specific row
r
updated by zx8754 1.2K • | written by f.m.1994 1
0 votes
1 reply
1.1K views
java.lang.UnsupportedClassVersionError
java picard gatk
updated by Ram 4.5K • | written by ali.kian.saei 1
0 votes
2 replies
2.3K views
Converting VCF to BEAGLE format
bcftools variant snp beagle vcf
written by diversitree 1
0 votes
2 replies
1.4K views
Subtypes from bulk RNA-seq to scRNA-seq
nmf scrna-seq tcga
written by tujuchuanli 14
1 vote
5 replies
1.6K views
MHV_A59 featureCounts
featurecounts rnaseq mhva59
updated by GenoMax 16K • | written by rajdeepboral00 7
0 votes
2 replies
1.9K views
PanSN naming issue in pggb fastas
pansn pggb
updated by colindaven 844 • | written by Whirlingdaf 6
0 votes
5 replies
3.3K views
cellranger error fix GTF
gtf cellranger scrna-seq
written by marco.barr 22
0 votes
0 replies
615 views
Radar plot from IREA (Immune response enrichment analysis)
irea
written by Biostars2200 0
0 votes
2 replies
1.4K views
"Unable to establish SSL connection" error for downloadin in wsl ubuntu by wget
ubuntu wget ssl hisat2 linux
written by ali.kian.saei 1
0 votes
1 reply
1.0K views
making a circos for snps indels and SV
circos
updated by Bastien Hervé 680 • | written by Bushra Bibi 8
0 votes
3 replies
3.0K views
Compute P-Values for SNP Fst from Pairwise Fst Calculations (--weir-fst-pop)
snp analysis calculation pairwise vcftools fst p-value calculations
updated by Jorge Amigo 1.4K • | written by Armin 1
0 votes
4 replies
2.1K views
chip seq data visualization
macs2 bamcompare bdgcomp deeptools chip-seq
written by nswati106 0
0 votes
0 replies
829 views
ssGSEA & WGCNA workflow approach
ssgsea wgcna
written by TNF_alpha 0
0 votes
4 replies
2.6K views
Create the correct contrast in limma when want to combine 2 or more groups
contrast limma dea
updated by Gordon Smyth 916 • | written by Lila M 130
1 vote
5 replies
1.9K views
cant import VCF into OneMap, read.vcfR works but onemap_read_vcfR doesn't
r onemap vcf vcfr
written by dimeresia 1
0 votes
7 replies
2.4K views
cellxgene DNA Methylation data
cellxgene
updated by LChart 518 • | written by 1769mkc 127
0 votes
7 replies
2.8K views
How to check for adapters?
adapters trimmomatic ngs
updated by Darked89 469 • | written by Luna 0
0 votes
2 replies
981 views
TCGA miRNA data query
tcga mirna
written by jain72744 1
0 votes
0 replies
633 views
TCGA -LIHC Isoform Expression Data
isoform tcga
written by jain72744 1
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