XWAS quality control

Hi,

I am writing to ask an advice about XWAS, I have raw genotyped call data and also the imputed data. I am doing XWAS analysis using imputed data. Is there any difference handling raw genotyped calls and imputed variants including plink --geno, --mind, --hardy command?

Thank you!

Best,
Junling

xwas quality-control

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updated 1.6 years ago by Ram

• written 1.6 years ago by renjunling2020 •

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