Hi everyone, I have two questions. 1. Does anyone knows which tool is the best for Methylation EPIC array analysis? Something as useful as ChAMP. …

Hi! This is my first post/question on biostars as I couldn't find my question after a few searches. Here it goes: Tools like MAGMA (https://ctg.cncr.nl/software/magma) …

Triggered and tempted while reading an article, I decided to pen down what chromatin states are. Probably this might help others down the lane who …

In my understanding information regarding the gene expression come from mRNA (exon) and control or regulation of a gene can get from non-coding part of …

Hi, What would you expect from a QQ plot in associations of SNP with gene expression across a whole chromosome? It should be extremely inflated …

I am using `impute2` to impute the genotype of a GWAS data with two reference panels, 1000GP and a WGS panel. impute2 -use_prephased_g -m genetic_map_chr22_combined_b37.txt …

Hi, How to read a Histone modification file in Wig format? I've found general explanation about the Wig Format [here](http://genome.ucsc.edu/goldenpath/help/wiggle.html), but I'm looking for one …

<p>Hi!</p> <p>I've performed a candidate gene association study and my top SNPs are all intronic SNPs. I've run them through a couple of basic annotation …

<p>Hi All, </p> <p>If designing a custom capture array for a subset of genes to sequence in an NGS/SNP study, does it make sense to …

<p>Hi,</p> <p>I have about more than 5 million SNPs that are present in the noncoding region of the genome.I want to see their functional effect …