Using ANNOVAR to identify variants falling within ALU elements
Hi,
I am trying to find if the variants in my VCF files (only G-to-C substitutions ie APOBEC edits) fall within the repetitive ALU repeats. I find that people have used ANNOVAR for similar analysis, however I couldn't find a direct answer on how to do it on ANNOVAR documentation.
Can someone help me with the same?
Thank you in advance,
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Aiswarya •
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