Genetic Trio Phasing with EAGLE2 using hg38
I would be very grateful if someone could point me to example code where I can phase genetic trios using EAGLE. The github and manual pages are extremely minimal. I would like to use hg38, and I have mom, dad, and child short-read sequencing data. Thank you!
INPUT: mom.fastq.gz dad.fastq.gz child.fastq.gz
DESIRED OUTPUT: child.phased.genotype.vcf
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