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1 vote
0 replies
1.3K views
Job: A 2 year postdoc position: The Genetics of the Silk Road
postdoc ancientdna paleogenetics silkroad ai
written by eranelhaik • eranelhaik
0 votes
1 reply
699 views
scRNA-seq analysis after overexpressing a specific gene
overexpression scrna-seq
updated by rfran010 • rfran010 • written by Song • Song
0 votes
3 replies
917 views
SCRNA calculate the average expression
scrna cell-single-sequence
updated by rfran010 • rfran010 • written by fuhaolll2 • fuhaolll2
0 votes
1 reply
860 views
Degree of Freedom Settings in edgeR limma
degree freedom voom analysis differential of edger limma
updated by ATpoint ATpoint • written by Wu-Sheng Zhang • Wu-Sheng Zhang
0 votes
0 replies
779 views
Convert genepop to bayescan format
rad-seq bayescan genepop pgdspider stacks
updated by GenoMax GenoMax • written by eaabbott0 • eaabbott0
0 votes
3 replies
1.0K views
missing data in taxonomy
taxonomy ncbi
written by noodle noodle
0 votes
3 replies
2.0K views
NA12878, NA12891 and NA12892 gold standard samples information
standard gold variant bam calling
updated by GenoMax GenoMax • written by heureuse • heureuse
0 votes
0 replies
533 views
AA/AB/BB Genotype information to Numeric
genotype illumina snp
written by Emilie • Emilie
0 votes
2 replies
1.2K views
Merge paired end reads after mapping in BAM files
bam paired-end merge
updated by rfran010 • rfran010 • written by muhammad_elhossary • muhammad_elhossary
0 votes
0 replies
756 views
How to perform cross-species integration?
integration seurat single-cell scrna-seq
written by Shankar112 • Shankar112
1 vote
9 replies
2.8K views
Unexpected spliced/unspliced percentages in scRNA-seq data
seq spliced unspliced analysis velocity data scrna
updated by predeus predeus • written by MS • MS
0 votes
2 replies
1.0K views
Spliced and unspliced counts from HIVE scRNA-seq data
hive velocyto scvelo scrna-seq
written by anna_o • anna_o
0 votes
1 reply
928 views
Whole genome resequencing sample size for population genetics?
whole_genome_resequencing population_genetics
updated by dthorbur dthorbur • written by Dylan • Dylan
0 votes
1 reply
1.5K views
Job: Post-doctoral Research Fellow Level 1
biomedical researcher post-doc biomolecular
written by jagoda.wychowaniak • jagoda.wychowaniak
0 votes
14 replies
3.2K views
Proteomics data analysis
data-analysis biostatistics statistics proteomics
written by Ariadna • Ariadna
0 votes
0 replies
843 views
News: Online course: Gene set enrichment analysis in R/Bioconductor
r bioconductor gsea genesetenrichmentanalysis
written by Physalia-courses Physalia-courses
0 votes
3 replies
1.3K views
How to connect the tips of several phylogenetic trees with ggtree?
r tanglegram phylogenetic tree ggtree
written by Luca Arbore • Luca Arbore
0 votes
5 replies
1.8K views
Extracting CDS Region of FFAR4 Gene Using Samtools from GRCh38 Reference Genome
samtools ccds grch38 genome cds
updated by jkbonfield jkbonfield • written by Rohan • Rohan
0 votes
2 replies
1.8K views
How to extract and analyze variant sequences from gnomAD v4 exome VCF
samtools bcftools exome vcf genomics
written by Rohan • Rohan
0 votes
3 replies
1.6K views
How to plot PCA for DEGs
deg for pca_plot
updated by san96 • san96 • written by otieno43 • otieno43
0 votes
6 replies
1.8K views
Why only C > A,T,G and T > A,G,C mutations typically considered in 96 SBS context plots
mutations snv
written by BioStar22 • BioStar22
1 vote
2 replies
1.2K views
help with finding start&and locations of gene list
gene locations
updated by GenoMax GenoMax • written by Naor • Naor
0 votes
5 replies
2.6K views
Ensemble Service error
ensembl gene
updated by GenoMax GenoMax • written by anasjamshed anasjamshed
1 vote
0 replies
750 views
Interpretation of WGCNA modules dendrogram
metadata sample wgcna clustering dendrogram
written by tommasoasquini • tommasoasquini
0 votes
0 replies
604 views
News: Introduction to Bayesian statistical modelling for biologists (online course)
bayes biostatistics modelling course
written by Rosina Savisaar • Rosina Savisaar
0 votes
2 replies
1.6K views
Problems with zero count values and mapping % in MaGeCK
crispr screen mageck
written by DragosV • DragosV
0 votes
1 reply
1.1K views
ENRICHMENT USING CLUSTERPROFILER
clusterprofiler somascan proteins enrichment
updated by ATpoint ATpoint • written by kl • kl
0 votes
4 replies
1.8K views
CNV Analysis and Visualisation
visualization cnv analysis
updated by QX • QX • written by jia • jia
0 votes
0 replies
543 views
Viewing nexus de bruijn graphs
de-bruijn-graphs nexus
written by guntul • guntul
0 votes
3 replies
1.6K views
VEP Unable to process HGVS variants
python vep genome
updated by Ram Ram • written by Yacob • Yacob
0 votes
2 replies
1.1K views
run snp2hla tool in windows subsytem for linux
snp2hla
updated by Ram Ram • written by anasjamshed anasjamshed
2 votes
4 replies
3.8K views
Best Practices for ATACseq for Performing Differential Accessibility Analysis
differential-accessibility csaw deseq2 atacseq
updated by Picasa Picasa • written by newbioinfograd2323 • newbioinfograd2323
1 vote
1 reply
1.1K views
What's the point of integrating single cell data of different conditions?
integration transcriptomics seurat single-cell
updated by jared.andrews07 jared.andrews07 • written by ARP • ARP
0 votes
2 replies
952 views
mapping reads to consensus - O coverage regions
mapping consensus coverage
written by elina2410 • elina2410
0 votes
3 replies
1.7K views
Write maf file (opposite of read.maf)
maf maftools r
written by Nona • Nona
0 votes
0 replies
948 views
Blog: Novogene Single-cell and Spatial Multi-omics Case Study II: Pan-cancer Research and Application
multi-omics single-cell
written by Novogene • Novogene
0 votes
0 replies
487 views
Can checkM do automatic genus identification?
checkm
written by blur blur
2 votes
0 replies
787 views
News: Pangenomix Ltd : A bioinformatics consulting venture
bioinformatics microbial genomics consulting
written by Nitin • Nitin
0 votes
5 replies
1.7K views
Integrating gene ontology DB's into pipeline scripts
david pipelines go
written by joemrosen • joemrosen
0 votes
3 replies
1.7K views
homer installation
homer
updated by GenoMax GenoMax • written by leslielebon • leslielebon
0 votes
1 reply
613 views
Advaita iPathwayGuide - How many GO modules are possible for each gene?
gene-ontology advaita
updated by Ram Ram • written by pbensing • pbensing
0 votes
2 replies
1.6K views
MAF tools - changing tumor sample barcode name
maf maftools r
updated by zx8754 zx8754 • written by Nona • Nona
0 votes
13 replies
2.9K views
Mouse genome featureCounts
grcm39 rna-seq featurecounts
written by rajdeepboral00 • rajdeepboral00
0 votes
5 replies
1.7K views
Convert bcf to vcf and run snp2hla tool in windows subsytem for linux
snp2hla vcf bcf
updated by Istvan Albert Istvan Albert • written by anasjamshed anasjamshed
0 votes
0 replies
661 views
Extracting coomon SNPs, medging SNP data from illumina platform and affymetrix (AXIOM SUITE).
bovine axiom chip genotyping
written by Maxmangomo1997 • Maxmangomo1997
0 votes
0 replies
747 views
How to Perform Lineage Analysis Using SNPs Derived from a De Novo Assembly?
plink phylogenetics vfc lineage lineage-analysis
written by alex • alex
1 vote
0 replies
1.5K views
Job: Job Opportunity - Remotely Allowed - Italy
data-analysis environmental-science r sql python
updated by colindaven colindaven • written by Federico • Federico
0 votes
1 reply
1.0K views
How to get all chromosomes RefSeq ID from RefSeq assembly ID?
assemblyaccession database entrez refseq ncbi
updated by GenoMax GenoMax • written by Maria • Maria
0 votes
5 replies
2.5K views
Help Analysing Perturb-Seq Data - How do I extract 10X cell barcodes and relevant guides from fastq files?
single-cell perturb-seq 10x
updated by ATpoint ATpoint • written by jesswhitts • jesswhitts
0 votes
0 replies
740 views
SNPnexus
snps histone snpnexus non-coding modification
written by saira • saira
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