biomaRt R package
Hello all, I have used rsem for my isoform level detection and got multiple transcript ids for a single gene, for eg,
ENSMUST00000042296.9 ENSMUSG00000062078.16 Qki-201
ENSMUST00000097414.11 ENSMUSG00000062078.16 Qki-202
ENSMUST00000232721.2 ENSMUSG00000062078.16 Qki-203
ENSMUST00000233645.2 ENSMUSG00000062078.16 Qki-204
ENSMUST00000233684.2 ENSMUSG00000062078.16 Qki-205
ENSMUST00000233828.2 ENSMUSG00000062078.16 Qki-206
Here i am getting names of the transcripts like 201,202 and so on, but from here how will i know that which one is qki5 and which one is 7 and so. I have surfed ensembl much , can anyone please suggest me how can i get that infomation, its like the same for every genes.
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rajdeepboral00 •
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It looks like Qki-204 (for qki5) if you cross-reference the transcript ID - UniProt ID - gene name. Step 1 - column 1 from the ensembl page; Step 2 - correlating to the uniprot ID