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0 votes
3 replies
1.5K views
Tools and software to visualize the moving cell compartments in 3D
3d-visualization cell-compartments
written by saamar.rajput 8
0 votes
0 replies
516 views
Computational tools for mapping potential epitope regions using mimotope-based methods
mimotope phage epitope
written by ceciliadlcgg 0
0 votes
0 replies
590 views
Problem with blastdbcmd. “Error: [blastdbcmd] Skipped TRANSCRIPT/4865”
blast
updated by Ram 4.5K • | written by elisamaarredondobel 0
0 votes
0 replies
957 views
Job: Data scientist/Bioinformatician University of Wisconsin Biotechnology Center Bioinformatics Resource Center
data-scientist
updated by Ram 4.5K • | written by jv 187
0 votes
3 replies
1.8K views
STAR alignment setting for RNA-Seq data from mouse background expressing a human ortholog
alignment star ortholog rna-seq
updated by swbarnes2 1.5K • | written by marionette.kent 0
0 votes
5 replies
3.4K views
(STAR) What causes a high number of reads that are unmapped because they are too short?
star rna-seq
updated by GenoMax 16K • | written by becky.reese 0
1 vote
1 reply
1.2K views
robust linear regression with interaction term
r epigenetic biostatistics statistics
updated by Jeremy 94 • | written by Bioinfonext 48
0 votes
3 replies
1.1K views
Help with mauve
mauve
updated by Ram 4.5K • | written by reachedahead225 0
0 votes
5 replies
1.3K views
p-value on excel for different number of mutant samples vs WT samples
rna-seq biostatistics
updated by ATpoint 9.1K • | written by abhatnagar 0
0 votes
6 replies
2.5K views
Uploading HiC track on UCSC browser
custom_track ucsc hic
updated by Maximilian Haeussler 179 • | written by arsala521 6
0 votes
5 replies
2.3K views
Does salmon work with combined short and long read bam file?
salmon
updated by callumjcparr 10 • | written by shinyjj 7
0 votes
1 reply
817 views
How does one create a custom VCF file?
genomics vcf
updated by Ram 4.5K • | written by manfi 2
0 votes
0 replies
697 views
Slow Python Script Pulling Metrics from Remora Oxford Nanopore
nanopore remora long-read ont
updated by Ram 4.5K • | written by turcoa1 0
0 votes
2 replies
1.2K views
Considerations for nanopore adaptive sampling enrichment designing
adaptive-sampling nanopore
written by njornet 2
1 vote
3 replies
2.0K views
Need help in using cutadapt to trim paired end fastq reads
fastq primer paried-end cutadapt
updated by Ram 4.5K • | written by George 0
0 votes
2 replies
995 views
WGCNA for co-expression network analysis
wgcna
written by Priya 0
0 votes
1 reply
659 views
Troubleshooting poor DP values
illumina gatk
updated by Pierre Lindenbaum 17K • | written by manfi 2
1 vote
2 replies
1.3K views
Kmers unique mapping
kmc alignment bowtie kmers
written by enee 2
0 votes
0 replies
725 views
How to get the minimun branch distance tree?
distance tree phylogenetics
written by Destineador 0
0 votes
0 replies
658 views
How can we deal with converted probe id in microarray?
r microarray probe ensembl
updated by Ram 4.5K • | written by wyt1995 4
0 votes
12 replies
3.3K views
BWA MEM different synthax on linux (bash) and macOS (zsh)
mem bwa
written by gernophil 15
0 votes
9 replies
2.9K views
Cutadapt error: too many parameters.
cutadapt parallel bash
updated by ATpoint 9.1K • | written by DanielEB_fisk 2
0 votes
0 replies
540 views
Issue opening modified .gff file in Artemis
gff artemis
updated by Ram 4.5K • | written by A_heath 18
0 votes
0 replies
436 views
How can one determine if a sample size is representative in scRNA-seq analysis?
scrna-seq
written by fifty_fifty 10
40 votes
14 replies
24K views
Tutorial: Methylation Analysis Tutorial in R - Part 1
r cancer methylation
updated by BioNoobie 2 • | written by Hamid Ghaedi 333
0 votes
1 reply
1.8K views
Calculating Species Abundance/Richness in Excel
species-abundance excel
updated by Ram 4.5K • | written by ilsa 0
0 votes
1 reply
827 views
RNAseq counts: transcript to gene
rnaseq
updated by Ram 4.5K • | written by MAPK2 5
0 votes
2 replies
924 views
How can I have the structure of a gene (or haplotypes of a gene) on the top of the LD plot on Haploview
ldplot haploview haplotypeblocks linkageformat
written by mona.patoughi 0
0 votes
7 replies
2.0K views
Snakemake rule that runs an assessment for once after completing other previous rules
snakemake
written by Fadlilah 1
0 votes
0 replies
846 views
Job: Postdoctoral research position at the Barts Cancer Institute - Queen Mary University London
cancer epigenomics transposable-elements
updated by Ram 4.5K • | written by Sergio Martínez Cuesta 23
0 votes
4 replies
1.3K views
Can I perform a Functional Enrichment Analysis on a specific list of pre-defined genes?
rna-seq dge
written by Adam 0
0 votes
11 replies
3.1K views
Filtering VCF based on codon-transcript
vcf bcftools
updated by barslmn 245 • | written by avelarbio46 3
0 votes
7 replies
1.7K views
PCR-cDNA sequence from MinION not alligned
minimap2 alignment cdna
written by marco.barr 22
0 votes
7 replies
2.2K views
Does vg call allow fuzzy match during SV calling?
vg
updated by Jordan M Eizenga 78 • | written by Maxine 5
0 votes
1 reply
824 views
Mutation, MAF, CPTAC-3
cptac mutation
updated by marco.barr 22 • | written by Rob 18
0 votes
3 replies
1.6K views
Single cell RNA sequencing analysis using R
scrna-seq
updated by Ram 4.5K • | written by fe.schiavetti 0
0 votes
6 replies
1.6K views
Contamination in my FASTQC files
fastqc bowtie2
written by carlosgonzalezcruz327 2
0 votes
0 replies
1.0K views
Job: Assistant professor in Computational biology with a focus on machine learning for multimodal molecular biology data
multiomics machine-learning
written by lukas.kall 4
0 votes
4 replies
1.3K views
Estimate cell label fitness in a clustering
single-cell cell-type
updated by LChart 518 • | written by roussine 1
0 votes
0 replies
792 views
Calculate PSI values for pre-called splicing events in GFF from new fastq files
alternative spladder psi splicing
written by sckinta 74
1 vote
2 replies
3.7K views
Filter out doublet and Clustering
single-cell
updated by jv 187 • | written by synat.keam 12
0 votes
9 replies
2.5K views
Max length reads from fastq
fastq
updated by Michael Dondrup 5.6K • | written by marco.barr 22
2 votes
34 replies
22K views
Issues installing bcl2fastq?
bcl2fastq demultiplexing
updated by barslmn 245 • | written by a.rex 35
0 votes
0 replies
971 views
Annotation transfer between QuPath (H&E) and 10X spatial transcriptomics Visium
alignment seurat spaceranger visium
written by Nicolas Rosewick 1.1K
0 votes
8 replies
3.6K views
Difference between GLM and Wilcoxon rank sum test
glm rank-sum wilcoxon
written by yxwucq 0
0 votes
0 replies
521 views
A way to read both the DNA fragment and the nascent RNA
chro-seq rna transcription net-seq nascent
written by Chris 0
0 votes
1 reply
1.1K views
seaborn dispersion graph
graph dispersion seaborn
updated by Shred 163 • | written by brunofelicianodeomena 0
0 votes
5 replies
1.4K views
How to normalise RNA seq data from two independent experiments to the same scale.
rnaseq
updated by jv 187 • | written by Mo 5
0 votes
0 replies
584 views
Get metadat from the ICGC data portal
hg38 icgc cancer
written by elisheva 12
0 votes
1 reply
787 views
Pileup of mapped diploid
diploid pileup
written by Axzd 8
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