This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How can I have the structure of a gene (or haplotypes of a gene) on the top of the LD plot on Haploview

Hi,

I used Linkage Format on Haploview to have my LD plot:

enter image description here

But also I need to have the gene structure on the top of my LD plot, something like this : enter image description here

How can I add this section? thanks a lot for the help.

ldplot haploview haplotypeblocks linkageformat

The example picture looks like a montage of the LD-plot with gene models from a - possibly UCSC - genome browser. If it is only for a single figure, doing something similar may be easiest. Set both applications to display the identical genomic range and export the images.

Thanks a lot. How about the below one? I am not sure if it is a montage one :

enter image description here

0 answers

No answers yet.

Log in to answer this question.