Mutation, MAF, CPTAC-3
Hi friends How can I download mutation data from CPTAC for kidney cancer (ccRCC)? Is there any R-code for this?
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You can use the GenomiDataCommons package from Bioconductor. For example, in an old topic I found this:
My advice is to carefully read the documentation to adapt this script to your data and what you want to find. Alternatively, there is a Python library that you can find here: https://pypi.org/project/cptac/ where you can download your data. Use the reticulate package to convert data tables into data.frames in R.