Hi friends
I want to do copy number variation analysis.
How I can download gistic file for all lesions, deletion and amplification separately?
what R code I should use?
I am running GISTIC on some modified ASCAT copy number profiles. Part of the algorithm is a deconstruction/reconstruction of the copy number profile to find …
I want to analyse prognosis of ovarian cancer patients according to the copy number variations of a specific region (e.g.8q24.11) in genome. Using TCGA level …
How can we calculate copy number variation(gain/loss/amplification/deletion)based on segment mean value or segment median given in TCGA CNV file? Also suggest a reference to such …