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The outputs of GISTIC

Hi.

I am trying to find the meaning of GISTIC result files.

I cannot figure out how GISTIC does estimate real copy number of genes.

I read two papers about GISTIC but I could not find the algorithm for copy number estimation.

How does GISTIC make all_data_by_gene.txt file?

I also would like to know the meaning of minimum arm-level amplification level which is used for sample_cutoff.txt

Does minimum arm-level amplification mean a median of segemtns whose size are similar to the chromosome arm length?

gistic cnv copy number
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updated by Kevin Blighe Kevin Blighe • written by agicict agicict

hi,

were you able to find the answer to your question?

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written by H.Hasani H.Hasani

1 answer

Please contact the GISTIC team directly:

Kevin

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written by Kevin Blighe Kevin Blighe

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