copy number variation, chrom plot
Hi people, I analyzed copy number variation and I have significant amplifications and deletions. I want to visualize it as chrom plot.
Does any body know what the input file looks like? this is the R code: I just do not know how to make gistic file. Is that the same as gistic.2.0 that we can get from TCGA ?
gisticChromPlot(gistic = gistic, markBands = "all")
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