WGCNA for co-expression network analysis
I am applying WGCNA to filter the handful of transcription factors of a specific family for a certain biological pathway but I don't want to extend upto module-trait relationship. I just want to get some transcription factors involved in a pathway so that I can move next to their wet lab validation. Am I going in right direction? OR Can you suggest more better co-expression network analysis bioinformatics technique which will be useful to my work?
Please help me. Thank you!
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You don't have to perform tests to assess module-trait correlations if that's not the focus of your research. It sounds like all you want are the gene modules, which is fine, just stop at the point of having gene modules.
Okay, Thanks a lot jv :)