More posts like this
-
How to actually identify which transcription factors are actively regulating a pathway/gene panel
written by Parth •I have identified a certain gene panel I want to further explore which transcription factors are actively regulating the gene panel, while I have identified …
-
How to find transcription factors list?
written by Tiara •Hello everyone I am new to bioinformatics and I am really confused about Transcription factors. I want to find TF lists of some genes and …
-
WGCNA for co-expression network analysis
written by Priya •I am applying WGCNA to filter the handful of transcription factors of a specific family for a certain biological pathway but I don't want to …
-
cytoscape subnetwork from WGCNA based modules
written by Omics data miningHello I have identified modules linked to some traits of interest in our study. All modules were imported in cytoscape. As next step, I want …
-
There any tools for gene regulation network visualizing?
written by KurbanHello guys, I have a set of transcription factors and their target genes (TF-TG connection), and their expression data from RNA-seq at a certain treatment …
-
Is there a database of proteins and their functional residues?
written by nida.farheen •Hello, I am working on Transcription factors activation domain. I am unable to get sequence annotations of Transcription Activation domains. I was wondering if there …
-
Is there a database of proteins and their functional residues?
written by nida.farheen •Hello, I am working on Transcription factors activation domain. I am unable to get sequence annotations of Transcription Activation domains. I was wondering if there …
-
Signaling network in R
written by SpacebioHello, I am new to bioinformatics and I was wondering if someone could supply a good review about how to implement signaling networks into R. …
-
transcription factor binding sites were not over represented in modules
written by beiki.h.m •<p>Hello, my name is Hamid, I have constructed a condition independent gene co-expression network. There are some transcription factors in modules of this network. The …
-
Bedops element or merge operation_which one is better to use in predicting regulated genes?
written by xiaoyonf •Hi, I have two bed files from ChIP-seq of two different transcription factors. I want to predict the genes with a binding site of both …
Could you post an example couple of lines of how the network data is formatted. I've never used metacore properly, but there's a range of graph/digraph parsers in R so it should be possible