How to generate a heatmap of a complex (three transcription factors)
Is there a way to generate a heatmap of a complex of transcription factors (in more detail, I am trying to generate a heatmap of the 7SK snRNP which is composed of Hexim, Larp7, and Cdk9) at the TSS. I can easily generate individual heatmaps for each of the separate TF's themselves using ngsplot or deepTools, but I was wondering if there was a way to combine all three into a single heatmap?
I also have some experience with R and Bioconductor so any packages can also be submitted as answers.
Thanks in advance
1 answer
Just use the "release-1.6" branch of deepTools, you can then include multiple samples in a heatmap (or profile plot).
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Devon Ryan
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