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0 votes
1 reply
664 views
BCFTools install vcfmerge.o error
vcfmerge.o bcftools
updated by Ram Ram • written by jaime alvarez • jaime alvarez
0 votes
0 replies
887 views
Job: Bioinformatics PhD position in Aarhus, Denmark
phd genomics cancer
updated by Ram Ram • written by besen • besen
0 votes
3 replies
1.6K views
rRNA depletion of RIP-seq samples
rrna rip-seq
updated by noodle noodle • written by CrisRisu • CrisRisu
2 votes
11 replies
4.2K views
How I know if it is a batch effect or are real differences between my controls and treatments?
rna-seq transcriptomics combat-seq batch-effect
updated by GenoMax GenoMax • written by alejandro.mejiam1 • alejandro.mejiam1
0 votes
4 replies
1.2K views
What is the samtools flag used in bamPEFragment?
deeptools
updated by GenoMax GenoMax • written by Soohyun • Soohyun
0 votes
5 replies
2.0K views
Creating an index from multiple .fsa files
hisat2 bwa alignment
written by theworldsagainstme • theworldsagainstme
0 votes
0 replies
830 views
batch correction: cds from seurat
batch-correction r seurat monocle3 cds
updated by Ram Ram • written by sooni • sooni
0 votes
0 replies
463 views
Seurat Package
seurat
written by odi • odi
0 votes
0 replies
555 views
RUVg correction
differential-expression ruvseq
updated by Ram Ram • written by Shaimaa Gamal • Shaimaa Gamal
0 votes
0 replies
628 views
How to annotate pairwise p value from limma (3 groups) in a combine multiple boxplot?
limma boxplot
written by Chris • Chris
0 votes
2 replies
776 views
small RNA creating .bam from .sam file
rna-seq
updated by GenoMax GenoMax • written by demekemewa13 • demekemewa13
0 votes
3 replies
1.6K views
Tool: DEGap - an online tool for Differential Gene Expression analysis
degap
written by Anastasia • Anastasia
0 votes
0 replies
606 views
Methylation workflow problem
rstudio methylation
updated by Ram Ram • written by Roy • Roy
0 votes
2 replies
1.5K views
How to row normalize a matrixplot?
scrna-seq rna-seq single-cell scanpy
written by bioinfo • bioinfo
0 votes
5 replies
1.7K views
seg fault, core dumped with manta 1.6.0
manta gdb
updated by Ram Ram • written by Greg • Greg
0 votes
1 reply
853 views
Pattern of GC content across reads from fastp
multiqc ddrad
updated by GenoMax GenoMax • written by jberg • jberg
0 votes
4 replies
2.8K views
PLINK p value returning NA
gwas plink
updated by chrchang523 chrchang523 • written by Sin Yu, Lin • Sin Yu, Lin
0 votes
6 replies
1.9K views
create a gene count matrix csv file from seurat object
seurat sparsematrix
written by jkim • jkim
0 votes
2 replies
945 views
Mapping of OMA IDs to UniProtKB AC
oma orthologs
updated by GenoMax GenoMax • written by george • george
0 votes
4 replies
1.5K views
How to fetch published paper of a BioProject
bioproject pumbed ngs
written by Morteza • Morteza
0 votes
0 replies
585 views
RNA velocity after SoupX in single cell data
soupx scrna transcriptomics nuclei
updated by GenoMax GenoMax • written by shersky • shersky
0 votes
5 replies
2.2K views
Getting refseq assembly accession numbers from list of species names
haystac accession refseq assembly ncbi
updated by GenoMax GenoMax • written by Kuldeep • Kuldeep
1 vote
1 reply
1.4K views
PLINK multivariable GLM output: p-value without BETA and SE
linear-model glm plink
updated by chrchang523 chrchang523 • written by dsbusiness135 • dsbusiness135
0 votes
2 replies
965 views
In need of help with my RNA velocity trajectory inference pipeline!
rnavelocity
written by phhelou5 • phhelou5
1 vote
13 replies
22K views
How Do I Translate Multiple (More Than 25000) Dna Sequences With Different Frames To Protein Seuquence?
dna protein
updated by ummeswaiba • ummeswaiba • written by biostar • biostar
0 votes
0 replies
1.2K views
Job: PhD in bioinformatics / computational biology
ngs omics evolution aging
written by Arne.Sahm • Arne.Sahm
1 vote
2 replies
3.0K views
latest dbSNP (ncbi) which genome assembly
ncbi dbsnp assembly genome
written by jaime alvarez • jaime alvarez
0 votes
8 replies
4.7K views
Simple explanation and usage of WGCNA package?
wgcna rna-seq chip-seq
updated by mflab • mflab • written by m.sadman.sakib m.sadman.sakib
0 votes
1 reply
939 views
How to do further funtional analysis of DEG KeggGet output list?
keggrest deseq2 rna-seq deg
written by joana.maclean • joana.maclean
1 vote
6 replies
6.8K views
10x to cloupe
single-cell-transcriptomics 10x
written by firestar firestar
0 votes
1 reply
640 views
DEseq2 experiment design
rna-seq r deseq2
updated by Ram Ram • written by naveedhasan2000 • naveedhasan2000
0 votes
10 replies
2.4K views
bash script
whole-genome-sequencing
updated by Ram Ram • written by bestone • bestone
0 votes
0 replies
752 views
Confusion with somatic variant calling: Advice on Ensembl-compatible resources?
gatk mutect2 ensembl
written by DGTool • DGTool
0 votes
1 reply
749 views
Constructing a pangenome
pangenome rice
updated by Michael Dondrup Michael Dondrup • written by Bushra Bibi Bushra Bibi
0 votes
2 replies
1.2K views
permutation test in edgeR
rna-seq edger
updated by Gordon Smyth Gordon Smyth • written by Netanel • Netanel
0 votes
0 replies
506 views
News: Online course: Multivariate Data Analysis with R and vegan
multivariate-statistics vegan r
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
0 replies
1.3K views
Different rsID for the same chromsome, position, ref & alt allele depending on different data sources. Which one should I use?
ukb rsid ukb-ppp ensembl-vep dbsnp
written by lsy9 • lsy9
1 vote
1 reply
3.4K views
Job: Full Stack Web Developer - Cambridge, UK
javascript python visualisation
updated by Anastasia • Anastasia • written by Richard Smith Richard Smith
0 votes
0 replies
569 views
How can I plot the PCA with the raw count mRNA seq data?
pca normalization
updated by Ram Ram • written by Yoomi • Yoomi
0 votes
0 replies
471 views
Blast2GO Fisher test
fisher-test go-annotation blast2go
updated by Ram Ram • written by BlackM • BlackM
0 votes
1 reply
1.6K views
Is it possible to use RSEM with BAM files from STAR alignment?
rsem alignment pre-computed star
updated by Thind amarinder Thind amarinder • written by knowNot • knowNot
0 votes
2 replies
2.4K views
Putting colors of different samples on PCA plot
pca
updated by Ram Ram • written by prity6459 • prity6459
0 votes
1 reply
802 views
How do I run fastq-dump on multiple prefetched files at once?
sratoolkit fastq-dump
updated by Pierre Lindenbaum Pierre Lindenbaum • written by biotrekker • biotrekker
0 votes
2 replies
912 views
Regions not clear in VCF
whole-exome variant-calling
updated by Ram Ram • written by priya.bmg • priya.bmg
0 votes
0 replies
519 views
NA values showing at duplicacy removal step
microarray rna-seq
written by prithvi.mastermind • prithvi.mastermind
1 vote
2 replies
1.2K views
ComplexHeatmap with specific rownames
complexheatmap
updated by Ram Ram • written by mrashad mrashad
0 votes
0 replies
460 views
Comparing molecular subtypes identified by microarray or bulk RNASeq in ssRNASeq data
microarrray single-cell rnaseq subtype
written by akhattri • akhattri
0 votes
4 replies
1.6K views
How to I use prefetch (SRAtoolkit) on multiple accessions all at one?
sratoolkit prefetch
updated by Pierre Lindenbaum Pierre Lindenbaum • written by biotrekker • biotrekker
0 votes
2 replies
1.3K views
What is the recomended z-score for filtration in GWAS studies
gwas
updated by LauferVA LauferVA • written by Orlando • Orlando
0 votes
1 reply
918 views
Human whole genome sequence analysis
human genome
updated by dthorbur dthorbur • written by Mahnoor • Mahnoor
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