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Pratik
Pratik
Reputation:
1,100
Joined:
6.0 years ago
Last seen:
3 months ago
Location:
Stamford, Connecticut
Twitter:
@PancreasPratik
Latest posts by user
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Answer: Answer: Scanpy Dotplot / Matplotlib Help
written by Pratik Pratik
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2 replies
1.4K views
Help regarding quality control of 10X run?
10x nuclei qc scnuc
updated by jared.andrews07 jared.andrews07 • written by Pratik Pratik
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Comment: Comment: Demultiplexing samples when barcodes repeat: Any advice?
written by Pratik Pratik
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Answer: Answer: adding gene and CDS feature types in ensemble gtf annotation with transcript and
written by Pratik Pratik
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Answer: Answer: How to do DE between cells expressing specific gene in scanpy?
written by Pratik Pratik
1 vote
1 reply
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Answer: Answer: Get the gene functions specific for clusters (RNA seq)
written by Pratik Pratik
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Comment: Comment: Should centering and scaling be done on methylation beta values for principal co
written by Pratik Pratik
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2 replies
1.4K views
Should centering and scaling be done on methylation beta values for principal component analysis (PCA)?
pca pcatools
written by Pratik Pratik
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Comment: Comment: Is it possible to bulk-download gene expression + methylation data for a specifi
written by Pratik Pratik
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3 replies
1.3K views
Is it possible to bulk-download gene expression + methylation data for a specific copy number loss on TCGA?
tcga
updated by Zhenyu Zhang Zhenyu Zhang • written by Pratik Pratik
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Comment: Comment: How to find CpG island shore?
written by Pratik Pratik
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1 reply
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Answer: Answer: How to find CpG island shore?
written by Pratik Pratik
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1 reply
1.2K views
When running salmon or star_salmon , are samples “independent” from one another during quantification (ie. to remove low quality samples after a multiqc quality-check)?
salmon pre-processing star_salmon rna-seq
updated by ATpoint ATpoint • written by Pratik Pratik
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934 views
Job: Research Technician – Computational Biology Core - (UConn CBC) - Connecticut
connecticut technician
updated by Ram Ram • written by Pratik Pratik
2 votes
3 replies
1.8K views
Conceptual questions regarding computational genome/annotation versions and their impact on the actual truth of sequencing?
wes sequencing wgs rna-seq
updated by benformatics benformatics • written by Pratik Pratik
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Comment: Comment: Pros and Cons of DNA Mass Spectrometry versus WES/WGS?
written by Pratik Pratik
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2 replies
1.7K views
Pros and Cons of DNA Mass Spectrometry versus WES/WGS?
spec mass wes dna wgs
written by Pratik Pratik
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1 reply
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Comment: Comment: What is a count matrix for input into Seurat supposed to look like?
written by Pratik Pratik
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Comment: Comment: How to embed known cell information into Seurat object? AddMetaData?
written by Pratik Pratik
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Comment: Comment: Seurat subset cluster cell annotation
written by Pratik Pratik
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