Tools for Sequence Consensus

Which tool can I use to create a consensus sequence between two cyanobacteria genomes with just over 5MB base pairs? I would prefer a tool with a graphical interface.

consensus-sequence bacteria

• 451 views • link

updated 2.3 years ago by Ram

• written 2.3 years ago by Reno •

0 answers

No answers yet.

More posts like this

What software and specific output files should I use to generate graphs from my Flye assembly??
written 2.0 years ago by hashim.rana11 •

I've assembled raw PacBio data using Flye software on the Galaxy server, and I received the following outputs: **assembly info**, **graphical fragment assembly**, **assembly graph**, …
Geneious Prime (Consense Sequence)
written 2.3 years ago by Reno •

I need to find consensus sequence between 6 genomes, each of them with more than 5mb of base pairs. I am using Genious software, I …
What is the difference between Roary and Orthofinder
written 4.2 years ago by Juliana •

Hi, I would like to know the difference between these two tools. Both tools create family genes through a comparison of genomes. I would like …
Clarification for bcftools consensus
written 5.7 years ago by dr_cfoster

Hi all, I have a `.vcf` file I generated using `bcftools mpileup` and then filtered to retain positions of interest. I now want to generate …
Consensus sequence of two genomes
written 6.2 years ago by RiccPicc •

Hi everyone. I have two genomes assembled from two different reads datasets of the same species. I would like to have a consensus sequence of …
Help! Obtaining consensus sequence from Aligned BAM file
written 7.1 years ago by Peeham •

Hi! I have just aligned a paired-end FastQ (R1 & R2) files to a published viral genome using Bowtie2. The end goal is to extract …
Strategy for generating a consensus sequence for 100 complete bacterial genomes?
written 8.1 years ago by Alec Watanabe

Greetings, I am working with a 100 complete *M. tuberculosis* genomes in FASTA format. What I want to do is align all the sequences to …
Merge multiple overlapping consensus sequences
written 8.1 years ago by kspata

Hi All, I have 10 consensus sequence files which have some overlapping regions between them. I would like to merge all of them to generate …
Test of selection across whole genomes
written 10.9 years ago by nicolas.dussex •

Hi, I have a question regarding test of selection in PAML using full genomes. My dataset contains multiple individuals (2 to 8) for the 6 …
Find A (Gapped) Sequence Within A Multiple Sequence Alignment
written 13.2 years ago by sorrywm •

<p>I have a large multiple-sequence alignment (~70,000 columns) from which I would like to extract a small number (~1,000) of columns. Specifically, I want the …