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What software and specific output files should I use to generate graphs from my Flye assembly??

I've assembled raw PacBio data using Flye software on the Galaxy server, and I received the following outputs: assembly info, graphical fragment assembly, assembly graph, and consensus. I'd like to create visual graphs from this data. Could you guide me on which software to use and which specific output file would be best for generating these graphs?

Any guidance or resources you can provide would be greatly appreciated!

Thank you!

pacbio galaxy-server flye
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updated by GenoMax GenoMax • written by hashim.rana11 • hashim.rana11

2 answers

If you are specifically looking to do this on galaxy then you may want to Quast appears to be available.

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written by GenoMax GenoMax

You can use bandage software to visualise assembly_graph.gfa file.

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written by bagdevi.mishra bagdevi.mishra

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