This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Consensus sequence of two genomes

Hi everyone.

I have two genomes assembled from two different reads datasets of the same species. I would like to have a consensus sequence of these two genomes. Genomes lenght are about 500Mb. Can someone help me?

Thank you!

genome alignment sequence

How are you going to define a consensus with only 2 genomes?

1 answer

You are looking for assembly reconciliation tools. Here is a comparison of some tools.

Thank you, that's what I was looking for!

Log in to answer this question.