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Multiple whole genome alignment tools ?

Hi everybody,

Do you any tools that could perform multiple whole genome alignment ?

I have 10 species of about 500Mb genome size.

I know already progressiveMauve and progressiveCactus but they are slow as hell..

If you have any recommendation, it would help a lot me a lot.

Thanks.

multiple whole genome alignment
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written by Picasa Picasa

You have a few eukaryotic (plant or animal) genomes,right?

In general, tools for whole genomes alignment:

For prokaryotes:

Multiple whole genome alignment

For eukaryotes:

How To Do Multiple Whole Genomes Alignments?

These ENSEMBL examples (below) look informative:

https://www.ensembl.org/info/genome/compara/multiple_genome_alignments.html

And WIKI has an overview of most available tools:

https://en.wikipedia.org/wiki/List_of_sequence_alignment_software

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written by natasha.sernova natasha.sernova

Yes these are eukaryotes but non mordel organisms (so not on Ensembl).

I ll take a look at the wiki page. Thanks.

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written by Picasa Picasa

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