Hello all -

as I can see, the Convert function of SeuratDisk (from h5Seurat to h5ad) will never touch the counts dataset (not-normalised matrix) of the default assay (e.g., "RNA") in a h5Seurat object, as it gives priority to "scale.data" (variable features only) and then "data" (normalised matrix) when filling X.

Is there a way to force such conversion?..

Thanks a lot in advance for any help

Leo