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0 votes
2 replies
1.5K views
WGCNA
pca wgcna eigengene
written by rajasekargutha 6
2 votes
6 replies
2.9K views
CompressedGRangesList don't have seqLengths: BiocParallel errors: Error in covRleFromGR(x, weight = weight, ignore.strand = ignore.strand): Seqlengths of x contains NA values!
gff3 genomicranges orfik genomicfeatures
updated by GenoMax 16K • | written by Estefania 3
0 votes
2 replies
1.5K views
Error when i use EVidenceModeler to do the genome annotation
evidencemodeler annotation genome
written by Wren 0
0 votes
3 replies
1.2K views
BLASTP web- <20aa peptides- interpreting results/ minimum E value?
blast peptide blastp alignment
updated by GenoMax 16K • | written by neish 0
0 votes
5 replies
1.9K views
Having trouble building VG in Ubuntu
vg
updated by Ram 4.5K • | written by ayushm64 0
0 votes
5 replies
4.6K views
Shannon vs Simpson for TCR diversity estimation
tcr shannon simpson
updated by ATpoint 9.1K • | written by CY 77
1 vote
0 replies
637 views
News: Online Live Course: Introduction to Machine Learning in R
rstats tscourses rlang rproject
updated by Ram 4.5K • | written by Transmitting Science communication 7
1 vote
0 replies
810 views
DESeq2 comparing timepoints within treatment and account for background control change
rnaseq deg deseq2
updated by Ram 4.5K • | written by ian.will 3
2 votes
0 replies
594 views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
gamm rlang rstats rproject
updated by Ram 4.5K • | written by Transmitting Science communication 7
2 votes
0 replies
621 views
News: Online Course Introduction to Network Analysis and Modelling
python network-analysis
updated by Ram 4.5K • | written by Transmitting Science communication 7
0 votes
3 replies
1.6K views
Merging vcf files with bcftools ([E::get_intv] Failed to parse TBX_VCF, was wrong -p [type] used?)
vcf tabix bcftools
updated by Pierre Lindenbaum 17K • | written by giulia.cosenza 2
0 votes
0 replies
641 views
Surrogate variable analysis for paired RNA seq experiment
sva rnaseq ruvseq
written by nhaus 44
0 votes
3 replies
924 views
True variants selection
vcf bcftools
updated by dthorbur 350 • | written by maevalefeuvre 0
0 votes
1 reply
683 views
How to reveal real AF of variant if duplicates can't be removed (such as in amplicon-seq)
allele-frequency amplicon-seq
updated by Ram 4.5K • | written by CY 77
0 votes
0 replies
657 views
Creating a BSgenome data package from a NCBI assembly - Virus
virus bsgenomeforge bsgenome r
written by JirMan 5
0 votes
7 replies
4.7K views
KEGG analysis in R
kegg clusterprofiler zea-mays
updated by letizia.ottaviani 0 • | written by san96 19
0 votes
0 replies
816 views
BETA whether on the same scale when performing rank-based inverse normal transformation on the same type of phenotype data for two cohorts separately and conducting GWAS on the transformed data?
normal inverse transformation
written by Isaac 0
1 vote
3 replies
1.9K views
Why is DESeq2 normalization making my top feature have identical values across samples?
deseq2 wgcna
written by DNAngel 26
0 votes
2 replies
1.4K views
Creating a cytoscape bubble figure
cytoscape network go
written by Dave Carlson 223
0 votes
3 replies
1.7K views
Disrupting a gene interaction network
cytohubba cytoscape sequences mrna
written by george 0
0 votes
1 reply
963 views
ClueGO is not showing custom data
cluego cytoscape
updated by Scooter 31 • | written by Nicolas 0
1 vote
7 replies
8.6K views
problem with HOMER findMotifsGenome.pl
homer atac-seq
updated by kaaz 0 • | written by ste.lu 8
1 vote
3 replies
1.7K views
Best genome browser for manual curation of gene structure(s)?
structure gene
updated by cmdcolin 448 • | written by William 540
0 votes
7 replies
8.2K views
How do I plot several sns.clustermap heatmaps in a single figure?
python seaborn
updated by Wubin 5 • | written by roy.granit 89
0 votes
1 reply
759 views
Human Methylation Infinum Bead - probe to gene mapping
tcga pancan data
updated by Zhenyu Zhang 130 • | written by shrutidesai0208 0
1 vote
5 replies
8.3K views
Is it just me or has www.ensembl.org been broken for a while?
ensembl
updated by joshua.theisen 3 • | written by gene_biostars 1
0 votes
0 replies
619 views
Installing SALSA and HIRise scafolding software
scafolding salsa genome-assembly hirise
updated by Ram 4.5K • | written by Lissa Cruz Saavedra 0
0 votes
1 reply
828 views
Extract Di-nucleotide/Tri-Nucleotide substitution frequencies from MSA/VCF file
msa substitution vcfstats evolution vcf
updated by Pierre Lindenbaum 17K • | written by Saran 6
0 votes
2 replies
1.1K views
Abundance Calculation in MetaPhlAn 3: Methodology, TPM or RPKM, and the Treatment of Unclassified Reads
metaphlan normalization rpkm tpm
written by ramin.k2013 0
0 votes
0 replies
548 views
Normalization in Metagenomics Sequencing By Total Number of Reads: Pre- or Post-Filtering and the Role of Unclassified Reads
normalization metagenomics
updated by Ram 4.5K • | written by ramin.k2013 0
0 votes
3 replies
1.3K views
Finding variants within a subset of a BAM file
variant calling
written by ramiro.barrantes 6
2 votes
1 reply
2.4K views
convert h5ad to rds
single-cell transcriptome
updated by bk11 312 • | written by lucas.aleixoleal17 2
0 votes
2 replies
1.8K views
Error during demultiplexing by bcl2fastq
bcl2fastq
updated by GenoMax 16K • | written by daffodil 1
0 votes
2 replies
1.1K views
Help with generating annotation database for dog genome to use in ANNOVAR for variant annotation of dog tumor sequences
annovar
written by sainavyav22 0
0 votes
1 reply
1.4K views
Clair3 very low F1 INDEL score
ont clair3 nanopore wgs
updated by yussab 10 • | written by Satrio 0
0 votes
9 replies
2.7K views
99.9999% of Q30 bases is normal?
rna-seq fastp
updated by LauferVA 497 • | written by Aki 2
0 votes
0 replies
780 views
Issue while using circle_dat function from GOplot in R
goplot r
written by ckelly96 0
0 votes
7 replies
6.5K views
fastp - can I trim specific adapters only?
trimming fastp adapter
written by liorglic 150
0 votes
2 replies
1.0K views
Can't figure out plink --sample-diff
plink
written by curious 90
0 votes
1 reply
6.9K views
How to compute a one tail (one way) log rank test for survival?
r survival hypothesis-testing log-rank
updated by jack 0 • | written by denalitastic 3
0 votes
1 reply
1.1K views
Geneious Prime (Consense Sequence)
consense sequence
updated by GenoMax 16K • | written by Reno 0
0 votes
2 replies
1.0K views
convert a seurat object to expressionset
seurat
written by Nona 9
2 votes
0 replies
536 views
News: Course Functional Programming with R
rstats tscourses rproject keeplearning rlang
written by Transmitting Science communication 7
0 votes
1 reply
691 views
Shared pathways up in disease blood and tissue relative to healthy blood (scRNA-seq)
scrna-seq
updated by ATpoint 9.1K • | written by Lucy 17
0 votes
4 replies
1.4K views
Per Base Sequence Content - continuous raise of G%
fastqc
updated by GenoMax 16K • | written by pl.terzian 0
0 votes
0 replies
737 views
Inferring cell identity/genotype in single cells with missing information
cell seurat single score
written by txema.heredia 31
0 votes
2 replies
1.1K views
fmols for nanopore library loading
nanopore sequencing libraryprep fmol lsk114
updated by GenoMax 16K • | written by njornet 2
0 votes
0 replies
395 views
cibersortx colnames
gema122
written by gem1 1
2 votes
37 replies
21K views
Convert Gene IDs of Tomato Sol Database
tomato gene
updated by aziz.hammou 0 • | written by kevluv93 17
0 votes
2 replies
1.3K views
Beagle imputation
beagle
written by mahlet.teka 0
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