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1 vote
0 replies
586 views
News: Landscape Genomics course in Switzerland
lfmm landscape-genomics sambada r local-adaptation
written by Physalia-courses Physalia-courses
1 vote
1 reply
1.1K views
Can anyone give me the code for in-silico digestion of whole genome with two restriction enzyme in "R" through Biostrings package?
whole-genome in-silico-digestion
updated by Ram Ram • written by Bhowmik • Bhowmik
1 vote
3 replies
1.5K views
cibersort. problem
cibersort gema122
updated by Amairani • Amairani • written by gem1 • gem1
0 votes
3 replies
1.3K views
multiple sequence alignment
blast multiple-sequence-alignment clustal-omega msa
updated by Ram Ram • written by catherinemaria2728 • catherinemaria2728
0 votes
2 replies
3.6K views
GSEA on non-model organisms: How to handle duplicated KEGG KO
kegg gsea clusterprofiler ghostkoala
updated by alserg alserg • written by mksaad28 • mksaad28
0 votes
3 replies
1.4K views
Visualize pathways from MSigDB
msigdb
written by Chris • Chris
0 votes
5 replies
4.6K views
primer design to discriminate sequences in intron-exon MSA
primer msa intron-exon
updated by Amruta • Amruta • written by Anand Rao Anand Rao
0 votes
2 replies
1.9K views
Prediction of microRNA targets
ncrna targetscan microrna mirdb miranda
written by ivmstalker • ivmstalker
0 votes
2 replies
2.5K views
kraken2 vs krakenuniq
krakenuniq kraken2
written by pinheirofabiano • pinheirofabiano
0 votes
9 replies
3.0K views
chromHMM annotations
chromhmm
updated by Bioinformatics_16 • Bioinformatics_16 • written by nswati106 • nswati106
0 votes
1 reply
724 views
Best way to add alter fastq file by adding short repeats
fastq
updated by GenoMax GenoMax • written by pairedttest • pairedttest
0 votes
7 replies
2.0K views
Artificial deletion in bam
bam
updated by Zhenyu Zhang Zhenyu Zhang • written by enee • enee
0 votes
3 replies
1.2K views
Help with finding Genomic coordinates and exon they belong to
genomics
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Sayantani • Sayantani
0 votes
1 reply
782 views
which reference does remora tests/data use?
alignment reference
updated by GenoMax GenoMax • written by anne • anne
0 votes
5 replies
1.9K views
Need information on how filterAndTrim function from the DADA2 pipeline was developed
filterandtrim dada2
updated by GenoMax GenoMax • written by George • George
0 votes
1 reply
1.2K views
POD5 files
ont
updated by GenoMax GenoMax • written by marco.barr • marco.barr
0 votes
4 replies
2.0K views
Ensembl stable ID cross-references
database parsing cross-reference ensembl
updated by Ben Moore Ben Moore • written by J • J
1 vote
4 replies
1.6K views
How to get human-mouse conservation score from UCSC
conservation mouse igv human score
written by diqixiaoyaoer • diqixiaoyaoer
4 votes
2 replies
1.8K views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
written by David Langenberger David Langenberger
0 votes
3 replies
1.8K views
Read Classification from ONT
classification reads nanopore
updated by dthorbur dthorbur • written by maevalefeuvre • maevalefeuvre
0 votes
4 replies
2.0K views
Error Codes in Snakemake
python snakemake
written by 888pea • 888pea
0 votes
0 replies
916 views
Problem with GATK FilterMutectCalls : using contamination table doesn' t change anything
vcf contaminationtable gatk filtermutectcalls genomics
written by Samuel • Samuel
0 votes
8 replies
2.7K views
FreeBayes encountered a sudden error
freebayes
updated by Michael Dondrup Michael Dondrup • written by emilydolivo97 • emilydolivo97
0 votes
1 reply
714 views
Quantify the junction abundance?
tcga splicing-junction
updated by Zhenyu Zhang Zhenyu Zhang • written by lm • lm
0 votes
3 replies
1.3K views
lncRNA from TCGA
lihc tcga lncrna
updated by ATpoint ATpoint • written by jain72744 • jain72744
0 votes
1 reply
798 views
How do I know whether it is not a failure of ChIPseq data
chipseq
updated by dthorbur dthorbur • written by Herman Einstein • Herman Einstein
2 votes
6 replies
2.1K views
The bioinformatics paper reappears, but the results are significantly different from the original results
reproducibility
written by yuanj • yuanj
0 votes
2 replies
1.2K views
Bioinformatics variant calling software
variant-calling
updated by Jeremy Leipzig Jeremy Leipzig • written by cFll • cFll
0 votes
0 replies
673 views
Saccharomyces cerevisiae orthologs in plants
database orthologs
written by dec986 dec986
0 votes
4 replies
1.5K views
Gene Ontology question
differential-expression gene-ontology
updated by Ram Ram • written by Bhawna • Bhawna
0 votes
0 replies
457 views
Looking for Comprehensive Virtual Screening Examples with Results Validation
drug-discovery virtual-screening molecular-docking
updated by Ram Ram • written by Stefano • Stefano
0 votes
1 reply
773 views
samflags to removes mapped concordantly >1 times
samtools bowtie2 metagenome
updated by jkbonfield jkbonfield • written by pompam_5904 • pompam_5904
0 votes
2 replies
1.2K views
Trying to write bwa mem -> samtools view -> samtools sort loop
bwa samtools mapping genome
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Lee • Lee
0 votes
0 replies
639 views
TransDecoder ORF score to filter "noise" from de novo transcriptome assembly
transdecoder assembly transcriptome
updated by Ram Ram • written by tdamiani • tdamiani
0 votes
2 replies
1.1K views
Problem with SRA
sra
updated by Ram Ram • written by Daniel • Daniel
0 votes
0 replies
523 views
Should I keep taxa that have 0 counts when calculating alpha diversity?
shannon-weiner
written by DNAngel DNAngel
0 votes
1 reply
2.1K views
How to do DE between cells expressing specific gene in scanpy?
scrna-seq single-cell scanpy
updated by Ram Ram • written by bioinfo • bioinfo
0 votes
5 replies
1.9K views
BUSCO analysis failed due to Duplicate of sequence in Input genome fasta. How to solve this problem ?
duplicate busco.
updated by GenoMax GenoMax • written by Sony Nguyen • Sony Nguyen
0 votes
8 replies
4.9K views
How to BLAST more than 5 sequences against UniProt database?
blast protein uniprot
written by Riq • Riq
0 votes
4 replies
1.8K views
UniProt accession number
protein uniprot
updated by Elisabeth Gasteiger Elisabeth Gasteiger • written by 1204079053 • 1204079053
2 votes
3 replies
13K views
Genotype representation with 0, 1, 2 - what do they mean?
genotype representation phasing imputation gwas
updated by far • far • written by Volka Volka
0 votes
1 reply
1.9K views
MMSeqs2 Removing Redundancy
mmseqs mmseqs2
updated by GenoMax GenoMax • written by dthorbur dthorbur
0 votes
7 replies
18K views
How To Annotate Methylation 450K?
methylation
updated by Vassilis • Vassilis • written by liu4gre liu4gre
0 votes
0 replies
376 views
Transcription Factor Binding sites intersecting Transposable Elements
te tfbp
written by M.Adiba • M.Adiba
0 votes
5 replies
1.7K views
WGCNA website
wgcna
updated by GenoMax GenoMax • written by Dave Carlson Dave Carlson
1 vote
2 replies
2.9K views
What is the relationship between Illumina P5 P7, universal adapters, and TruSeq Adapter Index 7?
fastqc ngs
written by octpus616 • octpus616
0 votes
4 replies
2.1K views
kmer analysis for genome size estimation
kmer merqury allotetraploid pacbio hifiasm
written by rj.rezwan • rj.rezwan
0 votes
5 replies
1.6K views
Incongruencies in GT assignment by Freebayes
depth freebayes heterozygous genotype
written by virginia.baraja • virginia.baraja
0 votes
3 replies
3.0K views
Problems with Nextflow to run NanoRtax Pipeline
nanortax nextflow nanopore
updated by colindaven colindaven • written by kerianaleerivera • kerianaleerivera
0 votes
1 reply
1.3K views
How plot multiple enrichment plot together
singlecell
updated by dthorbur dthorbur • written by synat.keam • synat.keam
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