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ramin.k2013
ramin.k2013
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2.5 years ago
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London
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Comment: Comment: Abundance Calculation in MetaPhlAn 3: Methodology, TPM or RPKM, and the Treatmen
written by ramin.k2013 0
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2 replies
1.1K views
Abundance Calculation in MetaPhlAn 3: Methodology, TPM or RPKM, and the Treatment of Unclassified Reads
metaphlan normalization rpkm tpm
written by ramin.k2013 0
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0 replies
569 views
Normalization in Metagenomics Sequencing By Total Number of Reads: Pre- or Post-Filtering and the Role of Unclassified Reads
normalization metagenomics
updated by Ram 4.5K • | written by ramin.k2013 0
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0 replies
848 views
Crassphage is not identified in fecal metagenomic samples using Metaphlan3 pipeline.
crassphage metagenomics gut metaphlan kraken2
written by ramin.k2013 0
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Comment: Comment: How to identify antibiotic resistant genes in gene databases?
written by ramin.k2013 0
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1 reply
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Comment: Comment: How to identify antibiotic resistant genes in gene databases?
written by ramin.k2013 0
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5 replies
2.5K views
How to identify antibiotic resistant genes in gene databases?
antibiotic gene-ontology go
updated by Ram 4.5K • | written by ramin.k2013 0
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0 replies
892 views
How to map Uniref90 genes (IDs) to Antibiotic resistant genes databases?
card metagenomics humann2 antibiotic-resistant-genes uniref
updated by Ram 4.5K • | written by ramin.k2013 0
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0 replies
634 views
How to create proteins of interest reference file for antibiotic resistant genes analysis?
shortbred card antibiotics
updated by Ram 4.5K • | written by ramin.k2013 0
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Comment: Comment: Microbial community analysis pipelines in metagenomics
written by ramin.k2013 0
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1 reply
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Comment: Comment: Microbial community analysis pipelines in metagenomics
written by ramin.k2013 0
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4 replies
2.1K views
Microbial community analysis pipelines in metagenomics
metagenomics kraken2 metaphlan3
updated by Ram 4.5K • | written by ramin.k2013 0
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2 replies
4.6K views
creating one abundance table of my samples using kraken2 output files
metagenomics visualization abundance kraken2
updated by patrickdm 26 • | written by ramin.k2013 0
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0 replies
1.4K views
fail to build kraken2 database (custom and standard)
kraken2
updated by Ram 4.5K • | written by ramin.k2013 0
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1 reply
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Comment: Comment: synthetic samples for small datasets in bioinformatics
written by ramin.k2013 0
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3 replies
1.6K views
synthetic samples for small datasets in bioinformatics
statistics ml
updated by Ram 4.5K • | written by ramin.k2013 0
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1 reply
911 views
accessing the global gut microbial gene catalogue (MEDUSA)
medusa gene-catalogue gut-microbiome
updated by Ram 4.5K • | written by ramin.k2013 0
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