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How to map Uniref90 genes (IDs) to Antibiotic resistant genes databases?

I have a gene abundance table for my metagenomics data. I want to just extract antibiotic resistant genes from the table and analyze them separately. The genes are defined based on the Uniref90 database. I am wondering how can I match the gene IDs (entry names or accession number) to the corresponding genes in antibiotic resistant genes databases such as CARD. Is there any way to convert the IDs across different databases?

card metagenomics humann2 antibiotic-resistant-genes uniref

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