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4 votes
2 replies
1.8K views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
workshop rna-seq dna-seq illumina
written by David Langenberger 1.1K
0 votes
2 replies
1.1K views
How to detect and visualize ORFs in bacterial genome?
statistics visualization orfs genome
written by marongiu.luigi 79
1 vote
13 replies
15K views
biomaRt: Timeout on getBM().
r biomart ensembl
updated by Mike Smith 211 • | written by lincaijin1994 5
0 votes
8 replies
7.3K views
cellranger mkref failed
next-gen-sequencing software-error rna-seq
updated by Zikun-Yang 0 • | written by Dan 18
0 votes
0 replies
691 views
Confused about the results of a function in dada2 pipeline sample inference step
microbiome r dada2
written by Mohamed Samir 3
1 vote
4 replies
2.1K views
I want to calculate if the sample has whole genome duplication event or not?
sequencing wgs
written by Hyper_Odin 32
0 votes
4 replies
1.3K views
Addmetadata to seurat obj
seurat
written by synat.keam 12
2 votes
8 replies
3.6K views
Why are the basics so complicated? Basic coverage filtering for VCF files
filter vcf coverage
updated by spen 4 • | written by MBarcelo 4
0 votes
5 replies
2.1K views
NCBI MEGABLAST versus UCSC BLAT
blast blat alignment megablast
updated by noodle 65 • | written by a615ebfb 8
0 votes
0 replies
681 views
Methylation array analysis using dmpFinder
epic methylation normalization dmp mset
written by Roy 2
2 votes
0 replies
665 views
News: Online course: Genome Annotation
genome-assembly rna-seq genome-annotation
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
4 replies
1.8K views
How to use pre-alignments by bowtie2
atac-seq bowtie2
written by Aki 2
0 votes
0 replies
752 views
Confused by the `--ld-window` flag in Vcftools. What does the number of SNPs between SNPs mean?
tabix vcftools
written by rijan_dhakal2055 1
0 votes
4 replies
1.6K views
Database or Tool: Identifying Gene Regions (Exon/Intron/UTR) from Chromosome Position
gene-region biomart ucsc-browser intron exon
updated by GenoMax 16K • | written by kelpotus22 0
0 votes
5 replies
1.4K views
Used featureCounts to generate a count matrix for sc RNA-seq and it has all 0s.
scrna-seq
updated by GenoMax 16K • | written by Shay 0
0 votes
1 reply
1.5K views
Extract bubbles in pangenome graph
graph pangenome bubble gfa
updated by colindaven 844 • | written by polag01 2
0 votes
0 replies
475 views
Databases with GoF (Gain of Function) annotations.
gof lof gain-of-function
written by _quantum_girl_ 8
0 votes
2 replies
1.3K views
Problem with downloading genome in SnpEff
snpeff
written by Javier 0
0 votes
3 replies
1.8K views
Using GPUs in snakemake
parabricks gpu snakemake slurm
written by raphael.B 57
0 votes
7 replies
3.0K views
STARsolo ; Reads are NOT mapped to transcriptome
starsolo
updated by GenoMax 16K • | written by gdfsnkfns 0
0 votes
0 replies
891 views
Comparison between Bracken outputs
bracken kraken taxonomy
written by SushiRoll 14
0 votes
4 replies
1.4K views
Adaptive sampling for whole chromosomes
t2t nanopore adaptivesampling aneuploidy centromeres
written by njornet 2
0 votes
0 replies
601 views
DESeq2 LRT divergent DEGs ?
interaction lrt deseq2
written by klervi-lugue 0
3 votes
0 replies
1.0K views
Herald: The Biostar Herald for Tuesday, April 09, 2024
herald
written by Biostar 380
0 votes
4 replies
1.5K views
Ubuntu storage space is decreasing automatically
ubuntu storage
updated by colindaven 844 • | written by Bushra Bibi 8
0 votes
2 replies
1.2K views
BLASTP short sequences (<20aa) - interpreting results
blast sequence blastp alignment
written by neish 0
0 votes
1 reply
683 views
BCFTools install vcfmerge.o error
vcfmerge.o bcftools
updated by Ram 4.5K • | written by jaime alvarez 3
0 votes
0 replies
896 views
Job: Bioinformatics PhD position in Aarhus, Denmark
phd genomics cancer
updated by Ram 4.5K • | written by besen 0
0 votes
3 replies
1.6K views
rRNA depletion of RIP-seq samples
rrna rip-seq
updated by noodle 65 • | written by CrisRisu 0
2 votes
11 replies
4.2K views
How I know if it is a batch effect or are real differences between my controls and treatments?
rna-seq transcriptomics combat-seq batch-effect
updated by GenoMax 16K • | written by alejandro.mejiam1 2
0 votes
4 replies
1.2K views
What is the samtools flag used in bamPEFragment?
deeptools
updated by GenoMax 16K • | written by Soohyun 0
0 votes
5 replies
2.0K views
Creating an index from multiple .fsa files
hisat2 bwa alignment
written by theworldsagainstme 0
0 votes
0 replies
843 views
batch correction: cds from seurat
batch-correction r seurat monocle3 cds
updated by Ram 4.5K • | written by sooni 2
0 votes
0 replies
474 views
Seurat Package
seurat
written by odi 3
0 votes
0 replies
565 views
RUVg correction
differential-expression ruvseq
updated by Ram 4.5K • | written by Shaimaa Gamal 1
0 votes
0 replies
632 views
How to annotate pairwise p value from limma (3 groups) in a combine multiple boxplot?
limma boxplot
written by Chris 36
0 votes
2 replies
793 views
small RNA creating .bam from .sam file
rna-seq
updated by GenoMax 16K • | written by demekemewa13 0
0 votes
3 replies
1.7K views
Tool: DEGap - an online tool for Differential Gene Expression analysis
degap
written by Anastasia 1
0 votes
0 replies
611 views
Methylation workflow problem
rstudio methylation
updated by Ram 4.5K • | written by Roy 2
0 votes
2 replies
1.5K views
How to row normalize a matrixplot?
scrna-seq rna-seq single-cell scanpy
written by bioinfo 19
0 votes
5 replies
1.8K views
seg fault, core dumped with manta 1.6.0
manta gdb
updated by Ram 4.5K • | written by Greg 0
0 votes
1 reply
867 views
Pattern of GC content across reads from fastp
multiqc ddrad
updated by GenoMax 16K • | written by jberg 0
0 votes
4 replies
2.9K views
PLINK p value returning NA
gwas plink
updated by chrchang523 1.1K • | written by Sin Yu, Lin 0
0 votes
6 replies
2.0K views
create a gene count matrix csv file from seurat object
seurat sparsematrix
written by jkim 25
0 votes
2 replies
964 views
Mapping of OMA IDs to UniProtKB AC
oma orthologs
updated by GenoMax 16K • | written by george 0
0 votes
4 replies
1.5K views
How to fetch published paper of a BioProject
bioproject pumbed ngs
written by Morteza 0
0 votes
0 replies
592 views
RNA velocity after SoupX in single cell data
soupx scrna transcriptomics nuclei
updated by GenoMax 16K • | written by shersky 0
0 votes
5 replies
2.3K views
Getting refseq assembly accession numbers from list of species names
haystac accession refseq assembly ncbi
updated by GenoMax 16K • | written by Kuldeep 0
1 vote
1 reply
1.4K views
PLINK multivariable GLM output: p-value without BETA and SE
linear-model glm plink
updated by chrchang523 1.1K • | written by dsbusiness135 1
0 votes
2 replies
974 views
In need of help with my RNA velocity trajectory inference pipeline!
rnavelocity
written by phhelou5 1
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