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0 votes
0 replies
536 views
How to extract BED-format annotation tracks for the newly inserted segments
bed mauve
updated by Ram Ram • written by FZ • FZ
0 votes
0 replies
598 views
Variant Calling for one gene - Stage of filtering
gatk picard variant-calling
updated by Ram Ram • written by andrebolerbarros • andrebolerbarros
0 votes
2 replies
1.0K views
Is refSeq table DNA or RNA coordinate?
refseq ucsc ncbi
updated by GenoMax GenoMax • written by Alewa Alewa
0 votes
3 replies
1.2K views
HISAT2 alignment issue
rnaseq alignment hisat2
updated by Ram Ram • written by eleven11 • eleven11
0 votes
0 replies
535 views
How to improve batch correction
ruvg batch-correction rna-seq
updated by Ram Ram • written by Shaimaa Gamal • Shaimaa Gamal
0 votes
0 replies
428 views
WGCNA: analysis of complex trait associations with regression
wgcna
written by w.cookson • w.cookson
0 votes
7 replies
2.4K views
How to build ribosomal interval files to use in CollectRnaSeqMetrics for hg38.p14
hg38.p14 ribosomal-intervals
updated by noodle noodle • written by n@4j • n@4j
0 votes
7 replies
6.5K views
Installing Cell Ranger
cellranger
written by gdfsnkfns • gdfsnkfns
0 votes
7 replies
10K views
fastq-dump: command not found, what is wrong?
assembly sratoolkit genomics
updated by ATpoint ATpoint • written by BioinfoNoob6 • BioinfoNoob6
1 vote
7 replies
2.7K views
UK biobank versus Genomics England
wgs dragen genomicsengland uk-brap vcf
updated by Orgie • Orgie • written by zizigolu zizigolu
0 votes
9 replies
2.1K views
variant calling
variant-calling
updated by Ram Ram • written by dalibenam64 • dalibenam64
2 votes
3 replies
1.6K views
TMM normalization with DESeq2
rna-seq deseq2
updated by Ram Ram • written by marco.barr • marco.barr
0 votes
0 replies
677 views
What does it means, when 2-direction perturbed pathways are identified in the gage enrichment analysis?
r pathway go-enrichment gage
written by Assa Yeroslaviz Assa Yeroslaviz
0 votes
1 reply
749 views
How to use the Rfoot output to eliminated nonribosomal sequence reads
profiling ribosome ribo-seq rfoot
written by nonaddldy • nonaddldy
0 votes
1 reply
1.2K views
Batch effect issue in RNA velocity analysis
rna-velocity integration
updated by ATpoint ATpoint • written by sarahmanderni sarahmanderni
0 votes
2 replies
1.4K views
Processing and calling SVs from PacBio data
pacbio long-read variant-calling
updated by Ram Ram • written by adarsh • adarsh
0 votes
4 replies
1.7K views
Compute bootstrap values on consensus tree
phylogeny tree raxml
written by pablo pablo
0 votes
1 reply
738 views
multiple reference sequences
freebayes
updated by GenoMax GenoMax • written by emilydolivo97 • emilydolivo97
0 votes
1 reply
1.7K views
Can't download txdbmaker package
aspli package txdbmaker r
updated by ATpoint ATpoint • written by Grace • Grace
0 votes
3 replies
1.2K views
P-value Threshold Consideration in Multi-Sample RNA-Seq Experiment
statistics rna-seq p-value
updated by Ram Ram • written by Netanel • Netanel
0 votes
2 replies
1.3K views
Using nextflow for performing quality control and trimming of reads
quality fastqc nextflow trimmomatic
updated by dthorbur dthorbur • written by nithya • nithya
0 votes
3 replies
1.2K views
Unable to downlaod files from GEO
geo
updated by Basti • Basti • written by Aaliya • Aaliya
0 votes
1 reply
1.1K views
Getting consensus/assembly from RAD-seq data locus, non-model organism
rad-seq
updated by Philipp Bayer Philipp Bayer • written by Andres • Andres
0 votes
1 reply
941 views
WGCNA is not generationg TOMfiles
wgcna
updated by LChart LChart • written by Nicolas • Nicolas
0 votes
3 replies
1.2K views
CCA with random effects model
cca
updated by dariober dariober • written by leranwangcs • leranwangcs
0 votes
1 reply
672 views
Tool for gene function identification
gene-function
updated by Ram Ram • written by Estevão • Estevão
0 votes
11 replies
3.4K views
Removing adapter/primer sequence from reads while keeping flanking regions
trimming fasta cutadapt bbduk fastq
written by Bryan • Bryan
0 votes
3 replies
1.5K views
can't download and use mageck-vispr for R?
mageck-vispr rstudio
updated by ATpoint ATpoint • written by Vishal • Vishal
0 votes
4 replies
1.6K views
I am unsure why my files are not being accepted in bedtools jaccard, any tips?
bedtools
written by Ronin • Ronin
2 votes
1 reply
2.9K views
Merging multiple PLINK files
plink merging
updated by Dinmukhamed • Dinmukhamed • written by Nejla • Nejla
0 votes
6 replies
2.4K views
Seeking Help with Unexpected MA Plot Output
maplot rnaseq rstudio
updated by Istvan Albert Istvan Albert • written by Pumla • Pumla
0 votes
0 replies
635 views
News: Online course: Eukaryotic Metabarcoding
metabarcoding biodiversity r edna
written by Physalia-courses Physalia-courses
0 votes
4 replies
1.7K views
Single cell analysis with "meta".tsv.gz file
single-cell
written by Estevão • Estevão
1 vote
5 replies
1.6K views
merging tetraploid vcf files through bcftools
vcf bcftools
written by Bushra Bibi Bushra Bibi
0 votes
7 replies
2.5K views
Use of Kraken output for functional analysis
metagenomics kraken shotgun
updated by alawrence2211 • alawrence2211 • written by Srinka • Srinka
0 votes
3 replies
1.3K views
How do I find up-to-date gene symbols for outdated names
names symbols gene
written by DSmith • DSmith
0 votes
5 replies
1.6K views
How to compare bulk RNA seq data demultiplexed in different ways?
rna-seq
updated by Ram Ram • written by bioinfo • bioinfo
0 votes
2 replies
964 views
What are crucial apps/ scripts for cancer genome/data analysis that can be set up as an web based app?
web based cancer
updated by LauferVA LauferVA • written by bartek • bartek
1 vote
2 replies
1.3K views
read length in structural variant calling
nanopore sv qc ont variant
written by eebloom • eebloom
2 votes
4 replies
1.4K views
Removing batch effect using combat-seq
combat-seq batch-effect rna-seq
updated by Ram Ram • written by Netanel • Netanel
0 votes
2 replies
943 views
HWE filter of vcf files
snp vcf.
written by Max • Max
0 votes
0 replies
475 views
Long-read data for Alpha-Thalassemia
thalassemia nanopore lonngread
written by adarsh • adarsh
0 votes
8 replies
2.5K views
Selection criteria for nanobody
nanobody
updated by Fran • Fran • written by farahnazir2 • farahnazir2
0 votes
1 reply
1.6K views
Drug drug interaction
drug-drug interaction
updated by tao001126 • tao001126 • written by shivangi.agarwal800 shivangi.agarwal800
0 votes
0 replies
689 views
Conditional analysis, direction of effect is changed after conditioning
gwas conditioning population analysis genetics
written by AMARU • AMARU
0 votes
1 reply
1.3K views
Cell type classification using an integrated reference
scrnaseq
updated by bk11 • bk11 • written by kayah • kayah
0 votes
2 replies
1.2K views
Adding Clinvar data source to funcotator
gatk clinvar funcotator gnomad
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Mojtaba • Mojtaba
0 votes
0 replies
631 views
rMATS reports zero evenets?
splicing rna-seq rmats
written by PK • PK
0 votes
3 replies
970 views
how to do the repeatability filtering of vcf files?
snp vcf.
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Max • Max
0 votes
5 replies
1.7K views
Homer giving troubles
homer homer
updated by Bryan • Bryan • written by naveedhasan2000 • naveedhasan2000
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