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1 vote
13 replies
22K views
How Do I Translate Multiple (More Than 25000) Dna Sequences With Different Frames To Protein Seuquence?
dna protein
updated by ummeswaiba 0 • | written by biostar 17
0 votes
0 replies
1.2K views
Job: PhD in bioinformatics / computational biology
ngs omics evolution aging
written by Arne.Sahm 0
1 vote
2 replies
3.0K views
latest dbSNP (ncbi) which genome assembly
ncbi dbsnp assembly genome
written by jaime alvarez 3
0 votes
8 replies
4.7K views
Simple explanation and usage of WGCNA package?
wgcna rna-seq chip-seq
updated by mflab 0 • | written by m.sadman.sakib 13
0 votes
1 reply
963 views
How to do further funtional analysis of DEG KeggGet output list?
keggrest deseq2 rna-seq deg
written by joana.maclean 0
1 vote
6 replies
6.8K views
10x to cloupe
single-cell-transcriptomics 10x
written by firestar 173
0 votes
1 reply
666 views
DEseq2 experiment design
rna-seq r deseq2
updated by Ram 4.5K • | written by naveedhasan2000 1
0 votes
10 replies
2.4K views
bash script
whole-genome-sequencing
updated by Ram 4.5K • | written by bestone 3
0 votes
0 replies
761 views
Confusion with somatic variant calling: Advice on Ensembl-compatible resources?
gatk mutect2 ensembl
written by DGTool 30
0 votes
1 reply
758 views
Constructing a pangenome
pangenome rice
updated by Michael Dondrup 5.6K • | written by Bushra Bibi 8
0 votes
2 replies
1.2K views
permutation test in edgeR
rna-seq edger
updated by Gordon Smyth 916 • | written by Netanel 3
0 votes
0 replies
513 views
News: Online course: Multivariate Data Analysis with R and vegan
multivariate-statistics vegan r
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
0 replies
1.3K views
Different rsID for the same chromsome, position, ref & alt allele depending on different data sources. Which one should I use?
ukb rsid ukb-ppp ensembl-vep dbsnp
written by lsy9 2
1 vote
1 reply
3.4K views
Job: Full Stack Web Developer - Cambridge, UK
javascript python visualisation
updated by Anastasia 0 • | written by Richard Smith 41
0 votes
0 replies
581 views
How can I plot the PCA with the raw count mRNA seq data?
pca normalization
updated by Ram 4.5K • | written by Yoomi 2
0 votes
0 replies
472 views
Blast2GO Fisher test
fisher-test go-annotation blast2go
updated by Ram 4.5K • | written by BlackM 0
0 votes
1 reply
1.6K views
Is it possible to use RSEM with BAM files from STAR alignment?
rsem alignment pre-computed star
updated by Thind amarinder 34 • | written by knowNot 0
0 votes
2 replies
2.5K views
Putting colors of different samples on PCA plot
pca
updated by Ram 4.5K • | written by prity6459 0
0 votes
1 reply
817 views
How do I run fastq-dump on multiple prefetched files at once?
sratoolkit fastq-dump
updated by Pierre Lindenbaum 17K • | written by biotrekker 11
0 votes
2 replies
925 views
Regions not clear in VCF
whole-exome variant-calling
updated by Ram 4.5K • | written by priya.bmg 7
0 votes
0 replies
524 views
NA values showing at duplicacy removal step
microarray rna-seq
written by prithvi.mastermind 6
1 vote
2 replies
1.2K views
ComplexHeatmap with specific rownames
complexheatmap
updated by Ram 4.5K • | written by mrashad 9
0 votes
0 replies
466 views
Comparing molecular subtypes identified by microarray or bulk RNASeq in ssRNASeq data
microarrray single-cell rnaseq subtype
written by akhattri 5
0 votes
4 replies
1.7K views
How to I use prefetch (SRAtoolkit) on multiple accessions all at one?
sratoolkit prefetch
updated by Pierre Lindenbaum 17K • | written by biotrekker 11
0 votes
2 replies
1.3K views
What is the recomended z-score for filtration in GWAS studies
gwas
updated by LauferVA 497 • | written by Orlando 0
0 votes
1 reply
920 views
Human whole genome sequence analysis
human genome
updated by dthorbur 350 • | written by Mahnoor 0
1 vote
0 replies
591 views
News: Landscape Genomics course in Switzerland
lfmm landscape-genomics sambada r local-adaptation
written by Physalia-courses 281
1 vote
1 reply
1.1K views
Can anyone give me the code for in-silico digestion of whole genome with two restriction enzyme in "R" through Biostrings package?
whole-genome in-silico-digestion
updated by Ram 4.5K • | written by Bhowmik 1
1 vote
3 replies
1.5K views
cibersort. problem
cibersort gema122
updated by Amairani 0 • | written by gem1 1
0 votes
3 replies
1.3K views
multiple sequence alignment
blast multiple-sequence-alignment clustal-omega msa
updated by Ram 4.5K • | written by catherinemaria2728 0
0 votes
2 replies
3.6K views
GSEA on non-model organisms: How to handle duplicated KEGG KO
kegg gsea clusterprofiler ghostkoala
updated by alserg 103 • | written by mksaad28 0
0 votes
3 replies
1.4K views
Visualize pathways from MSigDB
msigdb
written by Chris 36
0 votes
5 replies
4.6K views
primer design to discriminate sequences in intron-exon MSA
primer msa intron-exon
updated by Amruta 0 • | written by Anand Rao 65
0 votes
2 replies
2.0K views
Prediction of microRNA targets
ncrna targetscan microrna mirdb miranda
written by ivmstalker 0
0 votes
2 replies
2.5K views
kraken2 vs krakenuniq
krakenuniq kraken2
written by pinheirofabiano 14
0 votes
9 replies
3.0K views
chromHMM annotations
chromhmm
updated by Bioinformatics_16 0 • | written by nswati106 0
0 votes
1 reply
727 views
Best way to add alter fastq file by adding short repeats
fastq
updated by GenoMax 16K • | written by pairedttest 4
0 votes
7 replies
2.0K views
Artificial deletion in bam
bam
updated by Zhenyu Zhang 130 • | written by enee 2
0 votes
3 replies
1.2K views
Help with finding Genomic coordinates and exon they belong to
genomics
updated by Pierre Lindenbaum 17K • | written by Sayantani 0
0 votes
1 reply
783 views
which reference does remora tests/data use?
alignment reference
updated by GenoMax 16K • | written by anne 0
0 votes
5 replies
1.9K views
Need information on how filterAndTrim function from the DADA2 pipeline was developed
filterandtrim dada2
updated by GenoMax 16K • | written by George 0
0 votes
1 reply
1.2K views
POD5 files
ont
updated by GenoMax 16K • | written by marco.barr 22
0 votes
4 replies
2.0K views
Ensembl stable ID cross-references
database parsing cross-reference ensembl
updated by Ben Moore 241 • | written by J 0
1 vote
4 replies
1.6K views
How to get human-mouse conservation score from UCSC
conservation mouse igv human score
written by diqixiaoyaoer 2
4 votes
2 replies
1.8K views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
written by David Langenberger 1.1K
0 votes
3 replies
1.8K views
Read Classification from ONT
classification reads nanopore
updated by dthorbur 350 • | written by maevalefeuvre 0
0 votes
4 replies
2.0K views
Error Codes in Snakemake
python snakemake
written by 888pea 1
0 votes
0 replies
926 views
Problem with GATK FilterMutectCalls : using contamination table doesn' t change anything
vcf contaminationtable gatk filtermutectcalls genomics
written by Samuel 2
0 votes
8 replies
2.7K views
FreeBayes encountered a sudden error
freebayes
updated by Michael Dondrup 5.6K • | written by emilydolivo97 1
0 votes
1 reply
719 views
Quantify the junction abundance?
tcga splicing-junction
updated by Zhenyu Zhang 130 • | written by lm 0
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