POD5 files
Hello everyone, I'm wondering if there's a way to extract the reads located on the positive strand from pod5 files. Which commands among pod5 subset, filter from pod5 tool can I use? Or should I work directly from the fastq files? Thanks for your help.
• 1,209 views
•
link
updated
by
GenoMax
•
written
by
marco.barr •
•
written
by
marco.barr •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Protein stability analysis
written by marco.barr •
-
Biostrings extract read
written by marco.barr •
-
Max length reads from fastq
written by marco.barr •
-
Extract single chromosome reads from Bam file
written by marco.barr •
-
bcl2fastq conversion with specifying exact match of indices
written by Apex92 •
-
faste-dump for single-end data
written by eva.lucarelli •
-
fastqc duplicate reads
written by evelyn
-
Extracting a special chromosome in fastq file
written by Sakhaa •
-
Filter low quality tiles from fastq files downloaded from SRA
written by dolevrahat •
-
Max Length With Fastx Tookit
written by serpalma.v •
If you know which strand is "positive" then you should be able to get the reads from alignments using something like Samtools View: Only Forward Or Reverse Strand