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serpalma.v
serpalma.v
Reputation:
80
Joined:
12.7 years ago
Last seen:
3.9 years ago
Location:
Germany

about me

Latest posts by user
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Comment: Comment: ancestral allele SNP mouse biomart
written by serpalma.v • serpalma.v
0 votes
3 replies
2.2K views
ancestral allele SNP mouse biomart
biomart ensembl mouse snp
updated by Emily Emily • written by serpalma.v • serpalma.v
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0 replies
1.1K views
Evaluating RMSMappingQuality profile to set threshold
snp snp gatk variant calling filtering
updated by Nicolas Rosewick Nicolas Rosewick • written by serpalma.v • serpalma.v
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0 replies
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Comment: C: Insert size 350bp vs 400bp, any major downstream difference?
written by serpalma.v • serpalma.v
1 vote
2 replies
1.4K views
Insert size 350bp vs 400bp, any major downstream difference?
snp alignment sequencing
written by serpalma.v • serpalma.v
0 votes
0 replies
1.1K views
how can I extract intervals from bed file spanning a max larger interval in a windowed mode without disrupting intervals?
sequencing bed bedtools bedops
written by serpalma.v • serpalma.v
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1 reply
0 views
Comment: C: How to extract intervals for regions that are masked?
written by serpalma.v • serpalma.v
0 votes
3 replies
2.0K views
How to extract intervals for regions that are masked?
snp sequencing assembly
written by serpalma.v • serpalma.v
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0 replies
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Comment: C: Are there any issues with using sample reads coming from different technologies
written by serpalma.v • serpalma.v
0 votes
1 reply
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Comment: C: Are there any issues with using sample reads coming from different technologies
written by serpalma.v • serpalma.v
0 votes
7 replies
2.7K views
Are there any issues with using sample reads coming from different technologies and having different depths to do joint variant calling (gatk)?
gatk snp variant calling hiseq novaseq
updated by bari.ballew bari.ballew • written by serpalma.v • serpalma.v
0 votes
1 reply
3.4K views
How to replicate vcftool's sliding window SNP density?
snp sequencing vcftools
updated by Vitis Vitis • written by serpalma.v • serpalma.v
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0 replies
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Comment: C: How does plink calculates linkage disequilibrium (r2) in unphased data?
written by serpalma.v • serpalma.v
0 votes
2 replies
3.1K views
How does plink calculates linkage disequilibrium (r2) in unphased data?
plink snp sequencing
updated by chrchang523 chrchang523 • written by serpalma.v • serpalma.v
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1 reply
0 views
Comment: C: Interpretation of full LD between extremely distant SNPs
written by serpalma.v • serpalma.v
0 votes
3 replies
2.3K views
Interpretation of full LD between extremely distant SNPs
linkage disequilibrium snp
updated by Kevin Blighe Kevin Blighe • written by serpalma.v • serpalma.v
1 vote
0 replies
2.8K views
How to set the size of window for calculating Fst?
snp fst window
written by serpalma.v • serpalma.v
0 votes
0 replies
1.2K views
Scanning for selection using rehh2 from mouse WGS VCF
rehh2 sequencing mouse
written by serpalma.v • serpalma.v
0 votes
0 replies
2.5K views
How to detect outliers from either (a) SNP-Fst or (b) Window-Fst distributions?
fst vcftools
updated by h.mon h.mon • written by serpalma.v • serpalma.v
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1 reply
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Comment: C: Best tool for variant calling
written by serpalma.v • serpalma.v
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