Can anyone please provide me with some database to get short and long reads with assemblies of different rice varieties for the construction of pangenome?
Dear scientists, I have RNA-Seq data of rice samples. I analyzed two rice datasets from two different labs (Fastp, Hisat2, Samtools, FeatureCounts). Alignment rate of …
Dear all, I have Illumina short reads (paired-end) plant data for which reference genome is not available. I have to construct assembly with short reads …
Dear all, Can we construct single reference pangenome for different crops such as wheat, rice, maize or it is necessary to build separate pan genomes …
Hi everyone, I am doing annotation for rice pangenome. The pangenome was created based on an iterative mapping and assembly approach. The pangenome including IRGSP-1.0 …
My objective is to construct single sequence genome assembly. But I have short reads only without long reads. I got multiple contigs out of assembly. …