Hmm.. Someone needs to reverse engineer the .cloupe format :) https://github.com/10XGenomics/cellranger/blob/master/mro/stages/cloupe/cloupe_preprocess/__init__.py
More posts like this
-
Anndata vs cloupe
written by Rika •
-
cloupe to 10x format
written by M'zelle •
-
analyzing a single cell and searching for a specific gene using single cell data
written by Bioinfo •
-
How to convert cloupe files to mtx
written by Dorin-Mirel •
-
GEO scRNA-seq entry with cell type information?
written by pomodoro_sinensis •
-
Store a scRNA-seq ~gene expression "matrix.txt" as a "matrix.mtx" in R
written by choijamtsm
-
mat2csv matrix to csv
written by yueli7
-
To generate an scRNA counts file using barcodes.tsv, genes.tsv and matrix.mtx file
written by janejoythomas •
-
Post doctorate Fellow
written by janejoythomas •
-
Making scRNA counts file from barcodes, genes and matrix.mtx file
written by Paragon •
The .cloupe file contains additional information that is not available in those three files, so it would not be possible to convert them.
Anyone knows if something has happened here and made it possible somehow?
I would like to exclude features that are present in < 3 cells, this is possible in Seurat but not in Loupe browser. Does anyone know how to or if it is possible?
best Jonas
This was not an answer and should not have been added as one. I've moved it to a comment - please be more careful in the future.