How to row normalize a matrixplot?
Hello,
I made a heatmap with the command shown below. I was told that some of the genes are more lowly expressed that other so it s hard to see them on the same scale and was asked to row normalize the heatmap. How can I do that? For the heatmap I have already produced I used the normalized and logarithmized data.
sc.pl.matrixplot(adata, markers, groupby='leiden_0.4', cmap="Oranges", use_raw=True, swap_axes = True)
Thank you
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You can give a try with the
standard_scaleargument. From the documentation:Thank you. That is what I ended up doing.