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lincaijin1994
lincaijin1994
Reputation:
50
Joined:
5.4 years ago
Last seen:
3.7 years ago
Location:
Central
Latest posts by user
0 votes
0 replies
854 views
How to infer gene-level CNV status from ICGC data?
number cnv copy icgc
written by lincaijin1994 • lincaijin1994
0 votes
1 reply
1.1K views
Validate mutations from WGS using RNA-seq bam files in IGV?
rna-seq wgs igv
updated by Arup Ghosh Arup Ghosh • written by lincaijin1994 • lincaijin1994
1 vote
0 replies
691 views
Should Combat be performed if I want to compare a signature score between TCGA RNA-seq and our own RNA-seq data?
combat batch-effect rna-seq
updated by Ram Ram • written by lincaijin1994 • lincaijin1994
0 votes
0 replies
577 views
How to deal with it when EC50 is zero?
ic50 ctrp ec50
written by lincaijin1994 • lincaijin1994
1 vote
0 replies
946 views
How to run GISTIC 2.0 using CCLE segment file?
cnv copy gistic number
written by lincaijin1994 • lincaijin1994
0 votes
1 reply
0 views
Comment: Comment: How to interpret "pseudo count" in copy number data from CCLE?
written by lincaijin1994 • lincaijin1994
0 votes
1 reply
1.1K views
RNA sequencing data and batch effect
combat batch-effect rna-seq
updated by Ram Ram • written by lincaijin1994 • lincaijin1994
1 vote
4 replies
2.7K views
How to interpret "pseudo count" in copy number data from CCLE?
number copy cnv
updated by flalom • flalom • written by lincaijin1994 • lincaijin1994
0 votes
1 reply
1.1K views
How to understand or define some terms regarding copy number alterations?
number copy cnv
updated by Nana • Nana • written by lincaijin1994 • lincaijin1994
0 votes
0 replies
720 views
How to determine the cutoff of hypermutation?
tmb hypermutation
written by lincaijin1994 • lincaijin1994
0 votes
0 replies
0 views
Comment: Comment: TMB Tumor Mutation Burden
written by lincaijin1994 • lincaijin1994
0 votes
0 replies
1.3K views
Tumor mutation burden calculation based on bed file?
tmb bed
written by lincaijin1994 • lincaijin1994
1 vote
3 replies
3.3K views
How to subset vcf by sample and write?
bcftools vcf
updated by sbstevenlee • sbstevenlee • written by lincaijin1994 • lincaijin1994
0 votes
0 replies
0 views
Comment: Comment: biomaRt: Timeout on getBM().
written by lincaijin1994 • lincaijin1994
0 votes
1 reply
0 views
Comment: Comment: biomaRt: Timeout on getBM().
written by lincaijin1994 • lincaijin1994
0 votes
0 replies
0 views
Comment: Comment: biomaRt: Timeout on getBM().
written by lincaijin1994 • lincaijin1994
0 votes
0 replies
0 views
Comment: Comment: biomaRt: Timeout on getBM().
written by lincaijin1994 • lincaijin1994
1 vote
13 replies
15K views
biomaRt: Timeout on getBM().
r biomart ensembl
updated by Mike Smith Mike Smith • written by lincaijin1994 • lincaijin1994
0 votes
1 reply
0 views
Comment: Comment: How to identify variants in the last or penultimate exons?
written by lincaijin1994 • lincaijin1994
0 votes
4 replies
2.3K views
How to identify variants in the last or penultimate exons?
mapping variants exon
updated by Emily Emily • written by lincaijin1994 • lincaijin1994
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