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Multiple Spike-Ins

How do you handle multiple kinds of spike-in?

I just got a bunch of MeRIPseq data and the lab added two spike-ins: ERCC and m6A. Should I calculate the scale factor for ERCC and m6a separately or in combination?

My samples are grouped as Input and IP. Here's what the spike-in counts look like.

Spike In IP Spike-In Read Counts

Input Input Spike-In Read Counts

merip spike-in
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written by Adam • Adam

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