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How to highlight genes on genome visual reprezentation/what tool to use?

Hi everyone!

I have a bunch (pretty many) of bacteria genome assemblies which I want to visualize. Being more precise, I want to visualize circular genome representations and highlight a pull of genes on them (label the pool of genes or highlight them with colors). Ideally it would be desktop-based so I could process them using bash. What tool would you recommend for this? I was recommended using GenoVi, but as far as I can see it doesn't have this option unless I'm missing something.

gene genome
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updated by Alex Reynolds Alex Reynolds • written by shiksha • shiksha

1 answer

Circos: https://circos.ca/

There are implementations of Circos in other languages, just search on "Circos" and the name of the language.

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written by Alex Reynolds Alex Reynolds

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