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0 votes
2 replies
693 views
novel and know mir156 and mir172
a
updated by gayachit 20 • | written by Fadmo 0
0 votes
2 replies
1.4K views
Update R in Posit Workbench
r posit
written by Nitin 0
0 votes
6 replies
2.9K views
Pangenome of plant
pangenome plant
written by Bushra Bibi 8
0 votes
2 replies
1.2K views
vg call is time consuming
vg
written by Maxine 5
2 votes
14 replies
10K views
Installation: Tax4Fun2 package are not found and github repository is not maintained anymore
tax4fun2
updated by Ram 4.5K • | written by Elsa 2
0 votes
8 replies
3.0K views
STAR aligner options
star
written by theophile 0
1 vote
3 replies
1.3K views
Website or tool to obtain a list of genes that participate in a specific process?
genomics
updated by NancyTLi 2 • | written by Hamtaro 6
0 votes
2 replies
1.6K views
How to obtain Node/ Edge information from a Reactome Pathway
r api pathways reactome databases
updated by GenoMax 16K • | written by K.patel5 15
1 vote
3 replies
1.6K views
Why counting by diffbind and featurecounts differ?
featurecounts diffbind
updated by Ian 614 • | written by Ankit 52
0 votes
1 reply
736 views
Wanting to make a Venn diagram of ATACseq peak files, unsure of where to start
atac-seq
updated by Yogi 7 • | written by Ronin 1
0 votes
0 replies
402 views
Association Module to traits
module-trait-relationships wgcna genie3 domino
updated by Ram 4.5K • | written by r.shiasi3897 1
0 votes
0 replies
609 views
Number of pathway result from GSVA
gsva
written by Chris 36
0 votes
1 reply
783 views
How can I remove duplicate SNP?
plink
updated by iraun 627 • | written by Zhennan 0
0 votes
1 reply
621 views
SNP VCF files from hybrid populations and parental populations generated by GBS in public databases
contaminations verification parental check
updated by Ram 4.5K • | written by Hajar 0
0 votes
0 replies
514 views
Creating a custom ontology for peptides
ontology peptide
written by Mathew 0
0 votes
3 replies
1.8K views
convert cds to seurat object
r monocle3 seurat
updated by edoardofilippi1998 0 • | written by sooni 2
0 votes
0 replies
473 views
GSEA number dimension of expression dataset
gsea
written by edoardofilippi1998 0
0 votes
3 replies
1.3K views
Limma compare between 3 conditions vs 2 conditions
limma
updated by Gordon Smyth 916 • | written by Chris 36
0 votes
0 replies
567 views
single cell data integration approach
comparison integration pairwise singlecell
written by Jay 0
0 votes
3 replies
1.1K views
High number of detected genes per cell after doublet removal - scRNAseq data
scrnaseq duoblet
written by sarahmanderni 13
0 votes
3 replies
2.8K views
DESeq2 and normalization
rna-seq normalization deseq2
updated by dsull 781 • | written by JH 1
0 votes
2 replies
1.1K views
Error with goodSamplesGenes()
r wgcna
written by bioinfo_enthusiast 0
0 votes
0 replies
526 views
Variant Enrichment Analysis
analysis enrichment vep variant
written by Mojtaba 0
0 votes
7 replies
2.1K views
Salmon Quantification in Alignment based-mode
salmon rna-seq tpm
updated by GenoMax 16K • | written by Patadu94 0
0 votes
1 reply
683 views
dbsnp flanks information
dbsnp
updated by Pierre Lindenbaum 17K • | written by sskimvd 0
0 votes
2 replies
969 views
Cell communacations analysis. I only have the proteome of one type of cell
how to
updated by QX 9 • | written by David Arturo 0
0 votes
0 replies
570 views
bulk RNA-seq: how to remove batch effect between multiple batches and labels?
combat batch
written by kiraqueen 0
1 vote
2 replies
906 views
A pipeline for prediction and annotation of obelisks
rna-seq
updated by Pierre Lindenbaum 17K • | written by fred.s.kremer 11
0 votes
0 replies
523 views
Convert VCF file and add covariate information
vcf ped plink
written by asmariyaz23 1
0 votes
0 replies
507 views
Merging Hi-C datasets originating from experiments using different enzymes
enzymes hi-c
updated by Ram 4.5K • | written by hamarillo 8
0 votes
2 replies
2.4K views
Using the Ontology Lookup Service (OLS) API
api ols
written by longoka 4
2 votes
2 replies
1.0K views
Create a new reference genome with denovo assembly and standard reference with long read data?
pacbio
updated by gconcepcion 41 • | written by eorr 3
0 votes
3 replies
954 views
Extracting information from my VCF file
vcf
updated by bioruffo 6 • | written by realtreeecat 0
0 votes
4 replies
1.4K views
Coverage observed in introns in the Knockdown genes but not in knockout genes
rna-seq star igv
written by rohitsatyam102 95
0 votes
3 replies
3.2K views
Should I use Dfam or a custom repetitve elements library (from PlantRep) as a repeat database; using RepeatMasker in a Linux machine?
genome sequence repeatmasker blast
updated by b.contreras.moreira 49 • | written by Vijith 10
0 votes
0 replies
618 views
How to access an image (slice) of interest in spatial analysis
spatial-transcriptomics seurat visium
updated by Ram 4.5K • | written by piotto 2
0 votes
2 replies
1.0K views
Fpkm and log2fold change and pcr validation
fpkm
written by mounavisirekolam 0
0 votes
2 replies
1.3K views
Location of NCBI ftp site changed?
ftp ncbi
written by sampsa.hyvamaki 0
0 votes
1 reply
1.0K views
MACS3 or SEACR
macs3 seacr
updated by jared.andrews07 1.9K • | written by daffodil 1
0 votes
0 replies
515 views
Visium dataset distance between spots calculations
spatialseq visium
updated by GenoMax 16K • | written by houssi301 0
0 votes
0 replies
563 views
Best codeml model for estimating omega, M0 ?
codeml ete3 evol
written by Adrian Pelin 268
0 votes
1 reply
755 views
Pool-Seq same as normal variant calling?
pool-seq variant-calling
updated by dthorbur 350 • | written by andrebolerbarros 0
0 votes
1 reply
755 views
Karytotype color annotations
karyotype annotations chromosome color
updated by Pierre Lindenbaum 17K • | written by Mary 0
0 votes
1 reply
1.2K views
What alternative method would recommend for conducting gene ontology analysis?
wego gene-ontology
updated by dthorbur 350 • | written by mathavanbioinfo 8
0 votes
12 replies
3.6K views
Nanopore data filtering using fastp
fastp nanopore
written by emilydolivo97 1
0 votes
2 replies
906 views
Is it possible to see so little adipocyte in white adipose tissue?
scrna-seq
written by kayah 2
0 votes
2 replies
912 views
singlecell annotation
scrna-seq annotation
written by kayah 2
0 votes
12 replies
3.3K views
Facing problem with extracting phenotypic data from GEO
wgcna geo
written by bioinfo_enthusiast 0
0 votes
1 reply
1.9K views
Autodock tools error - The requested operation requires lifting
autodock mgltools
updated by zx8754 1.2K • | written by DOMENICA ALEXANDRA 0
0 votes
0 replies
458 views
t2t Reference gtf file
t2t
written by Emre 0
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